New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 325026034 (0.930)4 (0.120) 4/270 4.6 11.2% coding (184/300 nt) yqjK uncharacterized protein
?NC_000913_3_pae_tpiA = 3250270 31 (0.900)coding (194/300 nt) yqjK uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTC  >  NC_000913_3_pae_tpiA/3250125‑3250413
                                                                                                                                                 |                                                                                                                                               
cAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCGTGGGCGCAGGTTGGCAGTAGCGTGATGGCGAGCTGGCCGATGCg                                                                                                                                              >  2:134590/1‑149 (MQ=255)
 aGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGGTCGGCGCGTGAATATTCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGc                                                                                                                                             <  2:633733/149‑1 (MQ=255)
         caacaaCGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGTCGATTCGCCATCCTaa                                                                                                                                     <  1:561717/149‑1 (MQ=255)
          aacaacGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAat                                                                                                                                    <  2:142159/149‑1 (MQ=255)
                ggCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCTCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCTCCATCCTAATATGCTg                                                                                                                              <  1:560094/149‑1 (MQ=255)
                ggCTGGACCTTTCCGCCAGTCGTCGTGAATCGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTg                                                                                                                              <  1:433675/149‑1 (MQ=255)
                         tttCCGCCAGTCGTAGTGAAGGGCTGGAGACAACAGGCGCGTACGATCGGCGGTAGAATATCCTGCTACGACGGCGCGCTTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTgg                                                                                                                     <  2:394052/149‑1 (MQ=255)
                                      tcgtGAATGGCTGGAGACAATAGGCGCTTAGGATCGTCGCTGGAGTATGCTGCTAAGTCTGCGCTGCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGTACGATTCGCAATCCTACTAGGCTGGTCAGCTGGGCGCGACGTGGtt                                                                                                        >  2:325597/1‑149 (MQ=255)
                                           aaTGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCAGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGc                                                                                                   <  1:425829/149‑1 (MQ=255)
                                              ggCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCGTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTa                                                                                                <  2:299545/149‑1 (MQ=255)
                                                   gagaCAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAg                                                                                           >  1:446345/1‑149 (MQ=255)
                                                               gcTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTAGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCt                                                                               >  1:30053/1‑149 (MQ=255)
                                                                cTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGGGCGCCTGGCGTCTg                                                                              >  2:61624/1‑149 (MQ=255)
                                                                     gATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTGCTGGGCGGTGGTTGGCAGTAGCGTGATGGCGGTCTGGACGATTGGCCGTCCTAATATGCTGGTCCGCTGGGGCAGAGGCGGTTTTGGCATATGGAGCGCGTGGCGTCTGGTGaa                                                                         >  1:407055/1‑149 (MQ=255)
                                                                      aTCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTaaa                                                                        >  1:575142/1‑149 (MQ=255)
                                                                            gCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGAcc                                                                  <  1:361275/149‑1 (MQ=255)
                                                                                gAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCa                                                              <  2:94372/149‑1 (MQ=255)
                                                                                 aaTATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCaa                                                             >  1:6256/1‑149 (MQ=255)
                                                                                         gctAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAAc                                                     >  1:213408/1‑149 (MQ=255)
                                                                                               tCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTc                                               >  1:386828/1‑149 (MQ=255)
                                                                                               tCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTc                                               <  2:6256/149‑1 (MQ=255)
                                                                                                 tGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTcgc                                             >  2:30872/1‑149 (MQ=255)
                                                                                                        cTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCgg                                           <  1:179130/144‑1 (MQ=255)
                                                                                                        cTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCgg                                           >  2:179130/1‑144 (MQ=255)
                                                                                                             cgcTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCCTCCTAAGATGCTGGTCCGCTTGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCCCGGTTAACTTccc                                 >  1:152386/1‑149 (MQ=255)
                                                                                                               cTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCctc                               >  1:399690/1‑149 (MQ=255)
                                                                                                                 ggTTGGCGGTAGCGTGAGGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTg                             <  2:455951/149‑1 (MQ=255)
                                                                                                                 ggTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCAGCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTg                             <  2:47266/149‑1 (MQ=255)
                                                                                                                            gCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTACCTATGGCCGGAACCAt                  >  1:93240/1‑149 (MQ=255)
                                                                                                                              gTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTc                <  2:213408/149‑1 (MQ=255)
                                                                                                                                 aTGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCgg             >  2:208033/1‑149 (MQ=255)
                                                                                                                                      gATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAAGGCCTTGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCCGCGCCATTCCGGCCttg        >  2:251638/1‑148 (MQ=255)
                                                                                                                                            gACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTc  >  1:62051/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                               
CAGATCCAGCAACAACGGCTGGATCTTTCCGCCAGTCGTCGTGAATGGCTGGAGACAACAGGCGCTTACGATCGTCGCTGGAATATGCTGCTAAGTCTGCGCTCCTGGGCGCTGGTTGGCAGTAGCGTGATGGCGATCTGGACGATTCGCCATCCTAATATGCTGGTCCGCTGGGCCAGACGCGGTTTTGGCGTATGGAGCGCCTGGCGTCTGGTTAAAACGACCCTCAAGCAGCAACAGCTTCGCGGTTAACTTCCCTCTGGCCGGAGCCATTCCGGCCTTATCCCTC  >  NC_000913_3_pae_tpiA/3250125‑3250413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.