New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2814163 =	36 (0.990)	4 (0.120)	4/264	4.6	11.1%	intergenic (+9/+55)	emrB/luxS	multidrug efflux system protein/S‑ribosylhomocysteine lyase
	?	NC_000913_3_pae_tpiA	2814187 =	31 (0.920)					intergenic (+33/+31)	emrB/luxS	multidrug efflux system protein/S‑ribosylhomocysteine lyase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGCCAATGAGATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAAC  >  NC_000913_3_pae_tpiA/2814042‑2814329                                                                                                                                                   |                                                                                                                                               ccGCAAATGAGATCTTTTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCtttttt                                                                                                                                             <  2:84863/149‑1 (MQ=255)   gCCAATGAGATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTAGAAAGGATGGCTAAACCTCCATTTGGCGCAGGCGGCGGCGGAGGCGGTG‑CGCACTCAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCa                                                                                                                                           >  2:520443/1‑149 (MQ=255)    ccAATGAGCTCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaa                                                                                                                                          <  1:570550/149‑1 (MQ=255)      aaTGAGATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCaatt                                                                                                                                        >  1:466002/1‑149 (MQ=255)                        tCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTa                                                                                                                      <  1:466805/149‑1 (MQ=255)                            ccGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGa                                                                                                                  >  2:533438/1‑149 (MQ=255)                               ggctgttCCTCGTCCCGCTGTGGCTGGTGTGGTTGGCTAAACCGCCATTTGGCGCGGGTGGCGGCGGAGGCGGTG‑CGCACTTAGTACAACTGCGCCACTTCGTTTGAACTGGCTTTTTTCAATTAATTGTGACGATAGTTTACTGCCtc                                                                                                               >  2:226537/6‑148 (MQ=255)                                  tatGCCTCGTCCTGCTGTGGCTGGTGTGGTTTGCTAAGCCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCCAGCAGTGGTGAAGTTAGTTTGCTGACTAGAt                                                                                                            <  2:463059/149‑1 (MQ=255)                                     tCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGAtgtg                                                                                                         >  1:246992/1‑149 (MQ=255)                                           tCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTCCCATCGGTTGTGAAGATAGTTTACTGACTAGATGTGCAGTTc                                                                                                   <  1:477619/149‑1 (MQ=255)                                            ccTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCCGC‑ACGGCCTTGTCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTcc                                                                                                  <  1:311177/149‑1 (MQ=255)                                             cggcgggggCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCt                                                                                                 <  2:447325/144‑1 (MQ=255)                                               gctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGc                                                                                               <  2:627140/149‑1 (MQ=255)                                                ctgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCa                                                                                              >  2:306912/1‑149 (MQ=255)                                                 tgGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCaa                                                                                             <  1:105936/149‑1 (MQ=255)                                                         gtgtGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTAATGACTAGATGTGCAGTTCCTGCAACTTCTCtt                                                                                     >  2:76487/1‑149 (MQ=255)                                                            ttgTTTGGTAAACCGCTATTTGGGGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCg                                                                                  <  1:164132/147‑1 (MQ=255)                                                                 tGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGt                                                                             <  1:533438/149‑1 (MQ=255)                                                                  gCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTg                                                                            >  2:548505/1‑149 (MQ=255)                                                                      aaCCGCCATTTGGCGCAGGTGGCGGTGTAGGCGGTG‑CGCACTAAGTACAACGACGCCAGTCCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTTCAACTTCTCTTTCGGCAGTGCCAg                                                                        <  2:203758/149‑1 (MQ=255)                                                                            taTTTGGCGCAGGTGGCGGCGGATGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTTCTGCAACTTCTCTTTCGGCAGTGCCAGttcttc                                                                  <  1:27918/148‑1 (MQ=255)                                                                            cATTTGGCTCAGGTGGCGGCGGAGGCGTTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGttcttc                                                                  <  1:374230/149‑1 (MQ=255)                                                                            cATTTGGCGGAGGTGGGGGGGGAGGCGGTT‑GGCAGTAAGGACAACTAATGCAGTTCATTTCGACTGGCTTTTTTCAACTAATTGTGAAGCTAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGttcttc                                                                  <  2:325467/149‑1 (MQ=255)                                                                            cATTGGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGttcttc                                                                  <  2:536404/149‑1 (MQ=255)                                                                                        ggggcggcCGGAGCGGGT‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAACTAATTGTGAAGATAGTTTACTGAGTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCTAGTTCTTCGTTGCTGTTGAt                                                      <  2:23977/147‑1 (MQ=255)                                                                                          ggcggcCGAGGCGGTG‑CGCACTAAGTATAACTAAGGCAGTTCATTTGAACTTGCTTTTTTCGATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGc                                                    <  1:523025/149‑1 (MQ=255)                                                                                                       gTG‑CGCACTAAGTACAACTAAGCCAGTTCAGTTGAACTGGCTTTTTTCAATTAATTGTAAAGATAGTGTACTGACTACATGTGCAGTTCCTGCGACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTc                                       >  2:5427/1‑149 (MQ=255)                                                                                                              aCTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTCCGTCACGTTCCAGAAt                                 >  1:382419/1‑149 (MQ=255)                                                                                                                  aGTACAATTAAGCCGGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTa                             <  2:538304/149‑1 (MQ=255)                                                                                                                   gTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTAc                            <  2:469211/149‑1 (MQ=255)                                                                                                                    tACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCACCTTCTCTTTCGTCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTAcg                           >  2:171972/1‑149 (MQ=255)                                                                                                                        aaaaaGCCAGTTCAAATGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCa                       >  1:391834/4‑149 (MQ=255)                                                                                                                                             tGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAAc  >  2:575847/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                               CCGCCAATGAGATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTG‑CGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAAC  >  NC_000913_3_pae_tpiA/2814042‑2814329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.