Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_pae_tpiA	3423771–3424545	3424545	1–775	12 [11]	[11] 12	[rrfD]–[rrlD]	[rrfD],[rrlD]

TCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAGT  >  NC_000913_3_pae_tpiA/3424506‑3424694                                         |                                                                                                                                                     tccGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTaa                                          >  2:634444/1‑149 (MQ=32)       aCTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTcc                                    <  1:246653/149‑1 (MQ=32)         tctTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCGACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCa                                  <  2:555660/149‑1 (MQ=17)                gaggagACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCGACCCGGATTACGGGTCAACGTCGGGACAGCCAACAATAAAGGGAGGTATTTCAAGGCCGGCTCCATGAAGACAGGCGTCCACACTGCTAAGCCCCCCACCTAtgc                           >  2:371355/1‑147 (MQ=11)                gaggagACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATcc                           >  1:485209/1‑149 (MQ=32)                           tgctgtgaaaGTACCCACCCGACACCGTCCGCAACCCGGATTACGGGTCATCGTTAGCACATCAAACATTGATTTGTTGTATTTCAACGTCGGCCCCATGCAGCCTTTTGTTCACACGACTAGGCGTCCCCCCAGACCTACACATCAAg                <  2:299543/142‑1 (MQ=2)                           ccccGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACGTCTAAGCCTCCCACCTATCCTACACATCAAg                <  2:390050/149‑1 (MQ=17)                           cccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGATATTTCAAGCTCGGATCCATGCAAACTGGCGCCCACACTTCTAAACCTCCCACCTATCCTACCCATCAAg                >  1:121939/1‑149 (MQ=11)                            ccAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAgg               <  2:457707/149‑1 (MQ=32)                              aGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATAAAACATTAAAGGGGAGTATTTCAAGGTCGGCTCCATGAAGACTGGCATCCACACTTCTAAGCCGCACACCTACACTCACCATCAAGGCt             >  2:578641/1‑149 (MQ=11)                                     cTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGtt      >  1:366373/1‑149 (MQ=32)                                         ccaccaGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCaat  >  1:524683/1‑147 (MQ=17)                                         |                                                                                                                                                     TCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTGTCCGCAACCCGGATTACGGGTCAACGTTAGAACATCAAACATTAAAGGGTGGTATTTCAAGGTCGGCTCCATGCAGACTGGCGTCCACACTTCTAAGCCTCCCACCTATCCTACACATCAAGGCTCAATGTTCAGT  >  NC_000913_3_pae_tpiA/3424506‑3424694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑