New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 254294	NA (NA)	92 (1.110)	63/284	0.3	NA	coding (1423/1458 nt)	pepD	aminoacyl‑histidine dipeptidase (peptidase D)
	?	NC_000913_3_pae_tpiA	273955 =	NA (NA)					intergenic (+1/+146)	ykfC/insH1	CP4‑6 prophage; conserved protein;Phage or Prophage Related/IS5 transposase and trans‑activator

ACGTGGCAACCCGCGACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/254151‑254294 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTT  >  NC_000913_3_pae_tpiA/273955‑274102                                                                                                                                                                                                                                                                                                      ACGTGGCAACCCGCGACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCGGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAG                                                                                                                                                 >  1:1203845/1‑149   GTGGCAACCCGCGACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAGTTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGT                                                                                                                                               >  2:1280120/1‑149   GTGGCAACCCGCGACGGACATATACAGGGATGGCTTTTATCGAAGGATGATGAAGGGTGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCTCCGGAATTTCTTTCCGCCGTTCAGCAAGGGAAGGg                                                                                                                                               >  2:465314/1‑148    TGGCAACCCGCGACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTG                                                                                                                                              >  2:820418/1‑149     GGCAACCCGCGACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGC                                                                                                                                             <  2:105669/149‑1     GGCAACCCGCGACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGC                                                                                                                                             <  2:415135/149‑1        AACCCGCGACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGACTTTCTTTACGAAGTTGAGTCAGGGACGGTGAGAA                                                                                                                                          >  2:403088/1‑149        AACCCGCGACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAA                                                                                                                                          >  1:1114577/1‑149           CCGCGACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCATGGAAGGTGCGAATAc                                                                                                                                       >  2:1066842/1‑148               aACGGACAATTACAGGGATGGCTTTTATCGAAGAAAAATAAAAAAAAAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGG                                                                                                                                   <  1:558688/148‑1               GACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCGTCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCCGCAGTTCAGTCAGGCAAGGGGCGAATAAGCGG                                                                                                                                   >  2:1342098/1‑149               GACGGACATTTACAGGGATGGCTGTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGG                                                                                                                                   <  2:504637/149‑1                ACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGG                                                                                                                                  <  1:338042/149‑1                  GGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCATTTCAGTCAGGGAAGTTACGAATAAGCGGGGA                                                                                                                                >  2:478182/1‑149                  GGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGA                                                                                                                                >  1:570775/1‑149                    ACATTTACCGGGATGGCTTTTATCGACGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGAAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAA                                                                                                                              <  1:887617/149‑1                     CATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAAT                                                                                                                             >  1:181639/1‑149                      ATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAACTT                                                                                                                            >  2:905364/1‑149                        TTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCT                                                                                                                          >  2:1134294/1‑149                         TACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGG                                                                                                                                 >  2:838118/1‑141                         TACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGG                                                                                                                                 <  1:838118/141‑1                          ACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTCCGAATAAGCGGGGAAATTCTTC                                                                                                                        >  1:116164/1‑149                            cGGGATGGCTTTTATCCAAGGATAATGAAGGATGAAACTGCCGGACGGAGTGCGCACGGCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                                                                                                      <  1:42206/148‑1                            AGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                                                                                                      >  2:396927/1‑149                              GGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCag                                                                                                                    >  2:743309/1‑147                                      TTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCA                                                                                                            <  1:1343463/149‑1                                      TTTAGCGAAGGAGCATGAATGGTGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCA                                                                                                            <  2:227077/149‑1                                       TTATCGAGGGATAAGGAAGGATGAAACTGCCGGAAGGTGATTAAACGCCAGCCGGCAGCTAGTTAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGTCTCAG                                                                                                           <  2:635273/149‑1                                         ATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCCGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC                                                                                                         <  1:896544/149‑1                                         ATCAAAGGATAAGGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCAGCCGGCAGCAAAGCAAATAATTACTGCGCCGTAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC                                                                                                         <  1:661658/149‑1                                          TCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCA                                                                                                        >  2:350527/1‑149                                          TCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCA                                                                                                        <  2:1047973/149‑1                                                GATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCG                                                                                                                                    <  2:387370/115‑1                                                GATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCG                                                                                                                                    >  1:387370/1‑115                                                     TGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTT                                                                                             >  1:715513/1‑149                                                      GAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAATGTGCTAATAAGCGGGGAAATTCTTCTCGGCTGACTAAGTCATTTCATTTCTTC                                                                                            >  2:158152/1‑149                                                            TGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTT                                                                                      <  1:1329882/149‑1                                                              AAACCGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTTACTCAGTCATTTCATTTCTTCATGTTTGA                                                                                    <  1:1224999/149‑1                                                                ACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC                                                                                  >  2:1430493/1‑149                                                                 CTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCC                                                                                 >  2:895294/1‑149                                                                 CTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTCCTTCATGTTTGAGtc                                                                                 >  2:119987/1‑147                                                                     CGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATT                                                                             >  1:951589/1‑149                                                                         AGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTT                                                                         >  1:669361/1‑149                                                                          GGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTC                                                                        <  1:820418/149‑1                                                                             GATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGACTTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCC                                                                     >  2:1198114/1‑149                                                                             GATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCC                                                                     <  1:208669/149‑1                                                                             GATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGAACAAACAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTTACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCC                                                                     >  2:305247/1‑149                                                                              ATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCT                                                                                                                       <  2:191132/98‑1                                                                              ATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCT                                                                                                                       >  1:191132/1‑98                                                                                   gcggCATCTGGCAGGAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATATGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAA                                                               <  2:975665/145‑1                                                                                   ACGCCATCCGGCAGCAAAGCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAA                                                               <  1:886340/149‑1                                                                                           CGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGCAAATTCTGCCCGGCTGACTCAGTAATTTAATTTCTTCATGGTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA                                                       <  2:1314236/149‑1                                                                                             GCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATTTTTGAGCCGATTTTTTCTCCCGCAAATTACTTGAAT                                                     <  2:1345812/149‑1                                                                                             GCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT                                                     <  1:225838/149‑1                                                                                               AGCAATTCAAATAATTACTTCTGCGGACTTTCTTCCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCCGGGTAATTCTTCTCGGCTGGCTCAGTCATTTCATTTTTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCc                                                   <  2:547851/149‑2                                                                                                GCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAG                                                  <  2:341865/149‑1                                                                                                 CAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGC                                                 <  2:715513/149‑1                                                                                                       AAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTT                                           >  1:672675/1‑149                                                                                                       AAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGACTATct                                           >  1:778965/1‑147                                                                                                        AATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTA                                          >  2:1029871/1‑149                                                                                                           agttcCTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAC                                       <  1:753976/144‑1                                                                                                           AATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGGCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTCACCCGCTTTTTTCTCCCGTAAATCCCTTGAATCAGCCTCTTTTGAC                                       >  2:1146339/1‑149                                                                                                             TTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTATACCG                                     >  1:108586/1‑149                                                                                                             TTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAGCAGCCTACTTAGAACG                                     >  2:894898/1‑149                                                                                                              TACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGT                                    <  1:396927/149‑1                                                                                                                CTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTT                                  <  1:1238791/149‑1                                                                                                                CTTCGCCGGAATTTCTTTCAGCACTTCAGTCAGCGAAGGTTCCACCAATCTTAGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTT                                  <  1:330224/149‑1                                                                                                                 TTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTC                                 >  1:1274190/1‑149                                                                                                                 TTCGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTC                                 <  1:1430493/149‑1                                                                                                                   CGCCGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTT                               <  2:61671/149‑1                                                                                                                   CGCCGGAATTTCTTCCAGCAGTTTAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTT                               <  2:33435/149‑1                                                                                                                     CCGGAATTTCTTTTAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTACTTAGACCGTTTCTTCG                             <  1:1338169/149‑1                                                                                                                      CGGAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTTATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGC                            <  2:570775/149‑1                                                                                                                        GAATTTCTTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGCATCAGCCTATTTAGACCGTTTCTTCGCCA                          >  2:764542/1‑149                                                                                                                               TTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGG                   >  2:1121562/1‑149                                                                                                                               TTTCAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGCTTGGGACTCATATTTCTCCCGTAAATGCCTTGAATCAGCCTGTTTCGACCGTTGCTTGGCCATTTGAGG                   >  1:700125/1‑149                                                                                                                                  CAGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGT                <  2:1274190/149‑1                                                                                                                                   AGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTT                                                                            <  2:740853/88‑1                                                                                                                                   AGCAGTTCAGTCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTT                                                                            >  1:740853/1‑88                                                                                                                                      AGTTCAGTCATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC            <  2:1119942/149‑1                                                                                                                                            tgCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGT      >  2:544287/3‑149                                                                                                                                             TCAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTTTTTTTTTAATGCCTTAAATCCGCCTATTTAGACCGTTTCTTCGCCATTTAATGCGTTCTCCGCCGTT     >  2:1232320/1‑149                                                                                                                                               AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTTTTTTTTTTTTTCCTTGAATCAGCGTATTTAGACAGTTTCTTCGCCATTTAAGGTCGTATCCCCAGTTTT   >  2:1082759/1‑149                                                                                                                                               AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTT   >  2:1060839/1‑149                                                                                                                                               AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTT   <  1:1137158/149‑1                                                                                                                                               AGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTACCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTACCCCCAGTTat   >  2:1250921/1‑147                                                                                                                                               AGGGAAGGTGCGAATAAGCCGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTT   <  2:457006/149‑1                                                                                                                                               AGGGAAGGCGCGAATAAGCGGGGACATTCTTCTCGCCTGACTCAGTCATTTCATTTCTTCATGTTCGAGCCGATTTTTTCTCCCGTACATGCCTTGACTCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTT   <  1:2174/149‑1                                                                                                                                                GGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTT  >  1:1294850/1‑149                                                                                                                                                GGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTT  >  1:966819/1‑149                                                                                                                                                GGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTT  >  1:1089761/1‑149                                                                                                                                                GGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTT  <  1:1042230/149‑1                                                                                                                                                                                                                                                                                                      ACGTGGCAACCCGCGACGGACATTTACAGGGATGGCTTTTATCGAAGGATAATGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAGCAGTTCAGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/254151‑254294 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTT  >  NC_000913_3_pae_tpiA/273955‑274102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.