New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 224962	48 (0.580)	8 (0.100)	8/272	7.6	14.8%	noncoding (1192/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913_3_pae_tpiA	2729961 =	NA (NA)					noncoding (1197/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCG  >  NC_000913_3_pae_tpiA/224814‑225038                                                                                                                                                     |                                                                             gctggTGCTGCATGGATGTAGTCAGCTCGGGTTGTGAAAGGGTGGGTGAAGCGCCGCGACGAGCGAAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGAc                                                                              <  2:797691/146‑1 (MQ=11) aCAGGTGCTGCATGGCTGGCGCCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGAc                                                                              <  1:222159/149‑1 (MQ=17)   aGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGCGGATGACGt                                                                            >  2:961880/1‑149 (MQ=17)    ggTGCTGCATGGCTGTCGTCAGCTCGTGGTGTGAGATATTGGGTTAAGTCCCGCAACGAGCACAAACCTGATCTTTCGTTGGCAGCGGGCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGACGGTGGGGAGGACGTc                                                                           >  1:1001579/1‑149 (MQ=11)     gTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTTAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCa                                                                          >  1:180172/1‑149 (MQ=17)       gctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAg                                                                        >  1:791912/1‑149 (MQ=32)         tgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGtc                                                                      <  2:533273/149‑1 (MQ=32)                 tGTCGTCAGCTGGTGTTGTGAAATGTTGGGTTAACTCCCGCAACGAGCGCAACGCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCGAAGGAGACTGCCAATGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCATCTTGGc                                                              >  2:1147489/1‑149 (MQ=11)                 tGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGc                                                              >  2:250349/1‑149 (MQ=32)                    cgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAATTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCt                                                           <  1:1258194/149‑1 (MQ=17)                    cgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCt                                                           <  1:1019025/149‑1 (MQ=32)                     gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt                                                          <  1:300039/149‑1 (MQ=32)                     gtcAGCGCGTGTTGTAAGATGTTGGCTTAAGTCGCGCAACGAGTGCAACCCTTATCTTTTGTTGCCATCGGTCCGGCCGGGAACTCAAAGGAGTCTGCCAGTGATAAACCGGAGTAAGGTGGGGATGATGTCACGTCATCATGGCTCtt                                                          >  2:1188873/1‑149 (MQ=11)                      tcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa                                                         >  1:1028161/1‑149 (MQ=32)                         gCTCGTGTGGTGAAAGGTTGGGGTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGa                                                      <  2:77878/149‑1 (MQ=12)                          cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGCCGCCAAGTCATCATGGCCCTTACGAc                                                     >  2:872644/1‑149 (MQ=17)                            cGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa                                                   <  1:1007744/149‑1 (MQ=17)                            cGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa                                                   <  1:608802/149‑1 (MQ=32)                             gtgtTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg                                                  >  1:511786/1‑149 (MQ=32)                             gtgtTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg                                                  <  1:135283/149‑1 (MQ=32)                             gtgtTGTGAAATGTTGGGTTAAGCCCCGCAACGAGCGCAACCCTTATCTTTTGTGGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg                                                  <  2:1092696/149‑1 (MQ=17)                             gtgtTGAGACATGTTGGGTGAAGTCCCGCAACGAGCGCAACCCGTATCTTTTGTTGCCAGCGGCCCAGCCGGGAACTCAAAGGAGAATGCCAGTGATAATCTGTAGGAAGGTGGGGATGCCGTCAAGTCATCATGGCTCTTACGACCAg                                                  <  2:1311431/149‑1 (MQ=11)                               gatgtgAAAGGTTGGGTTAAGTCCCGCGACGTGCGCAACCCTTATCTTTTGTTGCCAGCGTTCCGGCCGGGAACTCAAAGCAGACTGCCACTGATAAACTGGAGGAAGGCGGGGATGACGTCGAGTGATCATGGCTCTTACGACCAggg                                                <  1:1188873/147‑1 (MQ=255)                                    gAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTaca                                           >  1:409862/1‑149 (MQ=32)                                     aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa                                                   >  1:386043/1‑140 (MQ=33)                                     aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa                                                   <  2:386043/140‑1 (MQ=32)                                     aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTacac                                          >  1:750764/1‑149 (MQ=32)                                       aTGTTGGGTTAAGTCGCGCAACGAGCGTAACCGTTATCTTTTTGTGCCAGTGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTCAAGTCATCATGGCCCTTACGAGCAGGGCGacacac                                        <  2:337221/149‑1 (MQ=11)                                          ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTg                                     >  1:1304048/1‑149 (MQ=32)                                          ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTg                                     <  2:206974/149‑1 (MQ=32)                                          ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTg                                     <  2:33227/149‑1 (MQ=32)                                                 aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAAt                              <  2:791912/149‑1 (MQ=32)                                                   gccccGCAACGAGCGCATCCCTTTGCTGTTGTTGCCAGCGGTCGCGACGGTAACGCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGTTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATgg                            <  1:1279361/147‑1 (MQ=11)                                                    tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGgc                           <  1:593246/149‑1 (MQ=32)                                                    tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGgc                           <  1:229272/149‑1 (MQ=32)                                                    tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGACAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGgc                           <  1:653525/149‑1 (MQ=17)                                                     cccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGAGAGACTGAGCGAAAGTGGGGATGACCTCAAGTCATCATGGCCCTTACGACCCGGACGACACACGGGCCACGATGgcc                          >  2:253578/1‑148 (MQ=11)                                                      ccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc                                                             <  1:466999/113‑1 (MQ=33)                                                      ccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc                                                             >  2:466999/1‑113 (MQ=33)                                                             gAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACaaa                  <  1:660315/149‑1 (MQ=32)                                                             gAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACaaa                  <  1:567594/149‑1 (MQ=32)                                                                cgcAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAagag               <  2:304363/149‑1 (MQ=32)                                                                  cAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGaa             <  1:250349/149‑1 (MQ=32)                                                                  cAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGaa             <  1:564684/149‑1 (MQ=32)                                                                   aaCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGTACTTTAAGGAGTCTGCCAGTGATATACTGGGGGAAGGTGGGGATGACGTCCAGTCATCATGGCCCTTCCGACCTGGGCTACACACGTGCTACATTTGCGCATTCGAAGAGTAg            >  2:763597/1‑149 (MQ=11)                                                                   aaCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGAGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAg            >  1:1040395/1‑149 (MQ=17)                                                                    aCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGc           <  1:68981/149‑1 (MQ=32)                                                                      gcTTATCTGTTGTTGGCAGGGGGCCGGGCGGGAACGCAAAGGAGAGTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGa         <  2:720570/148‑1 (MQ=11)                                                                      ccTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGa         <  2:511786/149‑1 (MQ=32)                                                                             ttttGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTGATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAAGGGCGCATACAAAGAGGGGCGACCTcgcg  >  1:31290/1‑149 (MQ=2)                                                                                                                                                     |                                                                             ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCG  >  NC_000913_3_pae_tpiA/224814‑225038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.