New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1552071 =	NA (NA)	9 (0.120)	7/260	7.8	NA	noncoding (1/97 nt)	RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_pae_tpiA	1552101 =	NA (NA)					noncoding (31/97 nt)	RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

CACCATCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTT  >  NC_000913_3_pae_tpiA/1551923‑1552218                                                                                                                                                     |                                                                                                                                                     cacCATCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATg                                                                                                                                                      >  2:309348/1‑149 (MQ=255)   ccATCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGcc                                                                                                                                                    <  2:1322464/149‑1 (MQ=255)      tCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGa                                                                                                                                                 >  1:918385/1‑149 (MQ=255)      tCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGa                                                                                                                                                 >  1:1319923/1‑149 (MQ=255)       cgggtgtGGTATCGGTAAATCTAGTAGTCACATGCAAAAAAAGAGATTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAt                                                                                                                                                <  2:574883/143‑1 (MQ=21)            atGGTATCGTGAAAGCGAGAAGACAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggc                                                                                                                                           <  2:798167/148‑1 (MQ=255)             tGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAATAAGGGATATAGTATATTTTGAACTTGAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcggcg                                                                                                                                          >  2:306937/1‑149 (MQ=25)             tGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCCCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAtcgcgcg                                                                                                                                          >  2:718475/1‑143 (MQ=255)              ggTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGGGt                                                                                                                                         >  1:611554/1‑149 (MQ=255)                  tCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGGGTTTTAGTTGGCGCCATTTTCATATTGTAGCCAACGTAGGTTTTGTTCATGCCGGATGCGGCGTGAAc                                                                                                                                     <  1:1132278/149‑1 (MQ=37)                    gTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGc                                                                                                                                   <  2:1011479/149‑1 (MQ=255)                     tGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGcc                                                                                                                                  >  2:802962/1‑149 (MQ=255)                     tGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGcc                                                                                                                                  >  1:933563/1‑149 (MQ=255)                        aaTCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTa                                                                                                                               >  1:1316797/1‑149 (MQ=255)                         aTCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTAt                                                                                                                              <  2:859903/149‑1 (MQ=255)                         aTCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTAt                                                                                                                              >  1:194843/1‑149 (MQ=255)                            gagaAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCTCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGAGGCGTGAACGCCGTAttca                                                                                                                           >  2:1298782/1‑146 (MQ=255)                              gaAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                                                                         <  1:802962/149‑1 (MQ=255)                               aaGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCTATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCa                                                                                                                        <  1:600568/149‑1 (MQ=255)                                  gCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCACGCCGCATCCGGCATGAAca                                                                                                                                    <  2:1168523/134‑2 (MQ=37)                                  gCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCACGCCGCATCCGGCATGAAca                                                                                                                                    >  1:1168523/1‑133 (MQ=37)                                   cAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGaa                                                                                                                    >  1:25060/1‑149 (MQ=255)                                     gAAGCGAAAAAAGAGAGTGAAGAAGGGTTATATTCACTTTTGAACTTAAAGCTGAAAATGGCGCTTTAAAAGGCCGCATTTTCATACGGTAGACAACGTAGGCTTTGTCAATGCCGGATGCCGCGTGAAAGCCTTATCCGGCATGtaaa                                                                                                                  <  2:51178/149‑1 (MQ=255)                                       aGCGAAAAAAGAGAGTGAAGAAGGGATATCATCCCTTTGGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAcc                                                                                                                <  1:634677/149‑1 (MQ=255)                                        gCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc                                                                                                               <  1:1235006/149‑1 (MQ=255)                                          gAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTATAAAAGACGCCATTTTCATATTGTCGAAAACGTAGGCTTTGTTCATGCCGGATCCGGCGTGACCGCCTTATCACGCATGAAAACAC‑tt                                                                                                            >  2:947310/1‑149 (MQ=21)                                              aaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCaaa                                                                                                        >  1:69113/1‑149 (MQ=255)                                              aaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCAGAATATATATCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTATGCTTTGTTCATTCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCaaa                                                                                                        <  1:406048/149‑1 (MQ=18)                                                agagagTGAAGAAGGGATCTCAGCACTTGTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATc                                                                                                      <  2:1022813/149‑1 (MQ=17)                                                      tGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGAGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAagag                                                                                                >  2:1365202/1‑149 (MQ=255)                                                         agaagGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGAtt                                                                                             >  2:89751/1‑149 (MQ=255)                                                         agaagGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGAATGAAAACCC‑TTCAAATCCAATAGAtt                                                                                             >  1:1257359/1‑149 (MQ=255)                                                          gaagGGATATAATCTCTTTTGAACTTTAAGCTGAAGATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTg                                                                                            >  2:398029/1‑149 (MQ=255)                                                            agGGATATAATCTCTTTTGATCTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCa                                                                                          <  1:834542/149‑1 (MQ=255)                                                            agGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCa                                                                                          <  1:398029/149‑1 (MQ=255)                                                            agGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGCGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCa                                                                                          <  1:1304723/149‑1 (MQ=255)                                                              ggATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGt                                                                                        >  1:1089884/1‑149 (MQ=255)                                                                atatAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTTCAAATCCAATAGATTGCAGTg                                                                                       >  2:269027/1‑149 (MQ=255)                                                                  ttaATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAAc                                                                                    <  1:327008/148‑1 (MQ=255)                                                                  ataATCTCTTTTGACCTTTATGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAAc                                                                                    <  1:327398/149‑1 (MQ=255)                                                                     aTCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACgtg                                                                                 >  2:402263/1‑149 (MQ=255)                                                                        tctTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAg                                                                              >  1:1205099/1‑149 (MQ=255)                                                                        tcgtttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCCCTTTCTTACTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAg                                                                              <  1:330583/146‑1 (MQ=14)                                                                          ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGaaaa                                                                                                                  >  1:662594/1‑112 (MQ=255)                                                                          ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGaaaa                                                                                                                  <  2:662594/112‑1 (MQ=255)                                                                          ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCACTCGATTGCAGTGAACGTGTAggg                                                                            >  1:600608/1‑148 (MQ=255)                                                                          ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGc                                                                            <  1:306937/149‑1 (MQ=255)                                                                               aaCTTTCAGCTGAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAt                                                                       <  2:145231/149‑1 (MQ=25)                                                                                 cTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg                                                                                                                           <  2:551492/96‑1 (MQ=255)                                                                                 cTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCg                                                                                                                           >  1:551492/1‑96 (MQ=255)                                                                                  tttAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGCTTGCAGTGAACGTGTAGGCCTGATagg                                                                    >  1:1048593/1‑147 (MQ=255)                                                                                  tttAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATagg                                                                    >  1:279638/1‑147 (MQ=255)                                                                                     aaGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGt                                                                 <  2:1108724/149‑1 (MQ=38)                                                                                       gCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAg                                                               <  1:566926/149‑1 (MQ=35)                                                                                        cggAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGTCGGATGCGGCGTGATCGCCTTATACGGCATGAAATCCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgc                                                              <  2:446352/147‑1 (MQ=255)                                                                                        cTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgc                                                              <  1:1043531/149‑1 (MQ=35)                                                                                         tGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgcg                                                             <  2:25060/149‑1 (MQ=34)                                                                                            aaaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑tt                                                                                                            <  2:951073/99‑1 (MQ=34)                                                                                            aaaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑tt                                                                                                            >  1:951073/1‑99 (MQ=34)                                                                                                ggCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAg                                                       <  1:269027/149‑1 (MQ=17)                                                                                                           aGGCGCCATTTGCAGATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGt                                           <  1:862366/149‑1 (MQ=17)                                                                                                            cgccccATGTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTAGCCGGGATGAAAATCC‑TTCAAACCCAATAGATGGCAGTGCGCGTGAAGGCCTGATAAGCGGAGCGCCTCAGGCAATGTTGCCtt                                          <  2:1172024/145‑1 (MQ=11)                                                                                                             gcgcCATTTTCATATTGTAGCCAACGAAGGCTTTGTTCATGCCGGAGGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt                                         <  1:633149/149‑1 (MQ=255)                                                                                                             gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCaa                                                                                                   >  2:1299115/1‑91 (MQ=33)                                                                                                             gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCaa                                                                                                   <  1:1299115/91‑1 (MQ=33)                                                                                                             gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt                                         <  2:279638/149‑1 (MQ=32)                                                                                                             gcgcCATTTTCATATTGTAGACAACATAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTACCCGGCATGAAAACCC‑TTTAAATCCAATAGATTGCAGTAAACGTGTAGGCCTGATAAGCTTAGCGCATCAGGCAATGTTGCGttt                                         <  1:1310445/149‑1 (MQ=11)                                                                                                               gcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGt                                       >  1:1039227/1‑149 (MQ=31)                                                                                                                            tGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaaa                          <  2:611554/149‑1 (MQ=33)                                                                                                                            tGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGCTTGTCATCAGTTTCaaa                          <  1:1201482/149‑1 (MQ=18)                                                                                                                              tAGACAGCGTAGGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATCGCCGTGAAGGTTGATGCCTGATATCACTAGGGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg                        <  2:307568/149‑1 (MQ=11)                                                                                                                                         ggCTTTGTTCATGCCTGATGCGGCCTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa             <  1:332286/149‑1 (MQ=255)                                                                                                                                         ggCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTTAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa             <  1:1392221/149‑1 (MQ=255)                                                                                                                                         ggCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa             <  2:1257359/149‑1 (MQ=40)                                                                                                                                                ttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGGATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTTAAAAGCGTCa      >  1:1246765/1‑149 (MQ=255)                                                                                                                                                  cATGCCGGATGAGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt    <  1:1365202/149‑1 (MQ=255)                                                                                                                                                    tGCTGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACTC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtttt  <  1:403452/149‑1 (MQ=255)                                                                                                                                                    tGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTTTAAAAGGCGTCAtttt  >  2:1244652/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CACCATCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTT  >  NC_000913_3_pae_tpiA/1551923‑1552218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.