New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1552101 =	NA (NA)	9 (0.120)	7/260	7.8	NA	noncoding (31/97 nt)	RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_pae_tpiA	1552249 =	NA (NA)					noncoding (1/97 nt)	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

AAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATG  >  NC_000913_3_pae_tpiA/1551953‑1552249                                                                                                                                                     |                                                                                                                                                      aaGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCTATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCa                                                                                                                                                       <  1:600568/149‑1 (MQ=255)     cAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGaa                                                                                                                                                   >  1:25060/1‑149 (MQ=255)       gAAGCGAAAAAAGAGAGTGAAGAAGGGTTATATTCACTTTTGAACTTAAAGCTGAAAATGGCGCTTTAAAAGGCCGCATTTTCATACGGTAGACAACGTAGGCTTTGTCAATGCCGGATGCCGCGTGAAAGCCTTATCCGGCATGtaaa                                                                                                                                                 <  2:51178/149‑1 (MQ=255)         aGCGAAAAAAGAGAGTGAAGAAGGGATATCATCCCTTTGGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAcc                                                                                                                                               <  1:634677/149‑1 (MQ=255)          gCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc                                                                                                                                              <  1:1235006/149‑1 (MQ=255)            gAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTATAAAAGACGCCATTTTCATATTGTCGAAAACGTAGGCTTTGTTCATGCCGGATCCGGCGTGACCGCCTTATCACGCATGAAAACAC‑tt                                                                                                                                           >  2:947310/1‑149 (MQ=21)                aaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCaaa                                                                                                                                       >  1:69113/1‑149 (MQ=255)                aaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCAGAATATATATCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTATGCTTTGTTCATTCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCaaa                                                                                                                                       <  1:406048/149‑1 (MQ=18)                  agagagTGAAGAAGGGATCTCAGCACTTGTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATc                                                                                                                                     <  2:1022813/149‑1 (MQ=17)                        tGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGAGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAagag                                                                                                                               >  2:1365202/1‑149 (MQ=255)                           agaagGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGAtt                                                                                                                            >  2:89751/1‑149 (MQ=255)                           agaagGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGAATGAAAACCC‑TTCAAATCCAATAGAtt                                                                                                                            >  1:1257359/1‑149 (MQ=255)                            gaagGGATATAATCTCTTTTGAACTTTAAGCTGAAGATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTg                                                                                                                           >  2:398029/1‑149 (MQ=255)                              agGGATATAATCTCTTTTGATCTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCa                                                                                                                         <  1:834542/149‑1 (MQ=255)                              agGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCa                                                                                                                         <  1:398029/149‑1 (MQ=255)                              agGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGCGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCa                                                                                                                         <  1:1304723/149‑1 (MQ=255)                                ggATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGt                                                                                                                       >  1:1089884/1‑149 (MQ=255)                                  atatAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTTCAAATCCAATAGATTGCAGTg                                                                                                                      >  2:269027/1‑149 (MQ=255)                                    ttaATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAAc                                                                                                                   <  1:327008/148‑1 (MQ=255)                                    ataATCTCTTTTGACCTTTATGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAAc                                                                                                                   <  1:327398/149‑1 (MQ=255)                                       aTCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACgtg                                                                                                                >  2:402263/1‑149 (MQ=255)                                          tctTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAg                                                                                                             >  1:1205099/1‑149 (MQ=255)                                          tcgtttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCCCTTTCTTACTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAg                                                                                                             <  1:330583/146‑1 (MQ=14)                                            ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGaaaa                                                                                                                                                 <  2:662594/112‑1 (MQ=255)                                            ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGaaaa                                                                                                                                                 >  1:662594/1‑112 (MQ=255)                                            ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCACTCGATTGCAGTGAACGTGTAggg                                                                                                           >  1:600608/1‑148 (MQ=255)                                            ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGc                                                                                                           <  1:306937/149‑1 (MQ=255)                                                 aaCTTTCAGCTGAAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAt                                                                                                      <  2:145231/149‑1 (MQ=25)                                                    tttAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGCTTGCAGTGAACGTGTAGGCCTGATagg                                                                                                   >  1:1048593/1‑147 (MQ=255)                                                    tttAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATagg                                                                                                   >  1:279638/1‑147 (MQ=255)                                                       aaGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGt                                                                                                <  2:1108724/149‑1 (MQ=38)                                                         gCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAg                                                                                              <  1:566926/149‑1 (MQ=35)                                                          cggAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGTCGGATGCGGCGTGATCGCCTTATACGGCATGAAATCCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgc                                                                                             <  2:446352/147‑1 (MQ=255)                                                          cTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgc                                                                                             <  1:1043531/149‑1 (MQ=35)                                                           tGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgcg                                                                                            <  2:25060/149‑1 (MQ=34)                                                              aaaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑tt                                                                                                                                           <  2:951073/99‑1 (MQ=34)                                                              aaaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑tt                                                                                                                                           >  1:951073/1‑99 (MQ=34)                                                                  ggCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAg                                                                                      <  1:269027/149‑1 (MQ=17)                                                                             aGGCGCCATTTGCAGATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGt                                                                          <  1:862366/149‑1 (MQ=17)                                                                              cgccccATGTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTAGCCGGGATGAAAATCC‑TTCAAACCCAATAGATGGCAGTGCGCGTGAAGGCCTGATAAGCGGAGCGCCTCAGGCAATGTTGCCtt                                                                         <  2:1172024/145‑1 (MQ=11)                                                                               gcgcCATTTTCATATTGTAGCCAACGAAGGCTTTGTTCATGCCGGAGGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt                                                                        <  1:633149/149‑1 (MQ=255)                                                                               gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCaa                                                                                                                                  <  1:1299115/91‑1 (MQ=33)                                                                               gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCaa                                                                                                                                  >  2:1299115/1‑91 (MQ=33)                                                                               gcgcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGttt                                                                        <  2:279638/149‑1 (MQ=32)                                                                               gcgcCATTTTCATATTGTAGACAACATAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTACCCGGCATGAAAACCC‑TTTAAATCCAATAGATTGCAGTAAACGTGTAGGCCTGATAAGCTTAGCGCATCAGGCAATGTTGCGttt                                                                        <  1:1310445/149‑1 (MQ=11)                                                                                 gcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGt                                                                      >  1:1039227/1‑149 (MQ=31)                                                                                              tGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaaa                                                         <  2:611554/149‑1 (MQ=33)                                                                                              tGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGCTTGTCATCAGTTTCaaa                                                         <  1:1201482/149‑1 (MQ=18)                                                                                                tAGACAGCGTAGGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATCGCCGTGAAGGTTGATGCCTGATATCACTAGGGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATg                                                       <  2:307568/149‑1 (MQ=11)                                                                                                           ggCTTTGTTCATGCCTGATGCGGCCTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa                                            <  1:332286/149‑1 (MQ=255)                                                                                                           ggCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTTAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa                                            <  1:1392221/149‑1 (MQ=255)                                                                                                           ggCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa                                            <  2:1257359/149‑1 (MQ=40)                                                                                                                  ttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGGATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTTAAAAGCGTCa                                     >  1:1246765/1‑149 (MQ=255)                                                                                                                    cATGCCGGATGAGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtt                                   <  1:1365202/149‑1 (MQ=255)                                                                                                                      tGCTGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACTC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCAtttt                                 <  1:403452/149‑1 (MQ=255)                                                                                                                      tGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTTTAAAAGGCGTCAtttt                                 >  2:1244652/1‑149 (MQ=255)                                                                                                                          ggATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCata                             <  2:1319923/149‑1 (MQ=255)                                                                                                                           gATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGGCATTTTCatat                            >  1:600045/1‑149 (MQ=255)                                                                                                                                 gcgTGAACGCCTTATCCGGCATGACAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGGGTAGCGCATCAGGCAATGTTGCGTTTGTGATCAGTTTCAAATGGCGCTGTAAAAAGTGTCATTTTCATATTggaca                      >  2:14036/1‑145 (MQ=14)                                                                                                                                 gcgTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCTTATTGTaaa                      >  1:859536/1‑147 (MQ=255)                                                                                                                                    tGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACaa                   >  1:252429/1‑149 (MQ=255)                                                                                                                                     gaccGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGTCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTCTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAAc                  <  1:952799/146‑1 (MQ=255)                                                                                                                                         gCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCaaa                                                         >  1:415902/1‑106 (MQ=35)                                                                                                                                          ccTTATACGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAgg             <  2:1207365/149‑1 (MQ=255)                                                                                                                                            ttATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCt           >  2:981322/1‑149 (MQ=255)                                                                                                                                               tCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTg        <  1:1064541/149‑1 (MQ=255)                                                                                                                                                 cGGCATGAAAACCC‑TTCAAATCTAATAGATTGCAGTGAACGTGTAGGCCTGATCAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCTCGGTTAAAGGCGTCATTTTCATATTATAGTCGACATAGGCGTTGtg      >  1:149400/1‑148 (MQ=17)                                                                                                                                                 cGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGtt      <  2:80585/149‑1 (MQ=255)                                                                                                                                                   gCATGAAAACCC‑TTCGAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCGATGTTGCGTTTGTCATCAGTTCCAAATGGCGCTTTAAAAAGCGCCATTTTCTTATTGTATACAACGTAGGCTTTATTCa    >  2:1187882/1‑149 (MQ=14)                                                                                                                                                     aTGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGTTGCATCAGAGGCTGCATTTTAATATGTGAGACAAGGTAGGCTTTGTTCATg  >  1:329758/1‑149 (MQ=14)                                                                                                                                                     |                                                                                                                                                      AAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCC‑TTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATG  >  NC_000913_3_pae_tpiA/1551953‑1552249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.