New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 224962	48 (0.580)	8 (0.100)	8/272	7.6	15.2%	noncoding (1192/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913_3_pae_tpiA	= 224967	43 (0.540)					noncoding (1197/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCG  >  NC_000913_3_pae_tpiA/224820‑225038                                                                                                                                                    |                                                                        gctgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAg                                                                        >  1:791912/1‑149 (MQ=32)   tgcATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGtc                                                                      <  2:533273/149‑1 (MQ=32)           tGTCGTCAGCTGGTGTTGTGAAATGTTGGGTTAACTCCCGCAACGAGCGCAACGCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCGAAGGAGACTGCCAATGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCATCTTGGc                                                              >  2:1147489/1‑149 (MQ=11)           tGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGc                                                              >  2:250349/1‑149 (MQ=32)              cgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAATTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCt                                                           <  1:1258194/149‑1 (MQ=17)              cgtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCt                                                           <  1:1019025/149‑1 (MQ=32)               gtcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCtt                                                          <  1:300039/149‑1 (MQ=32)               gtcAGCGCGTGTTGTAAGATGTTGGCTTAAGTCGCGCAACGAGTGCAACCCTTATCTTTTGTTGCCATCGGTCCGGCCGGGAACTCAAAGGAGTCTGCCAGTGATAAACCGGAGTAAGGTGGGGATGATGTCACGTCATCATGGCTCtt                                                          >  2:1188873/1‑149 (MQ=11)                tcAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTa                                                         >  1:1028161/1‑149 (MQ=32)                   gCTCGTGTGGTGAAAGGTTGGGGTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGa                                                      <  2:77878/149‑1 (MQ=12)                    cTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGCCGCCAAGTCATCATGGCCCTTACGAc                                                     >  2:872644/1‑149 (MQ=17)                      cGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa                                                   <  1:1007744/149‑1 (MQ=17)                      cGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa                                                   <  1:608802/149‑1 (MQ=32)                       gtgtTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg                                                  >  1:511786/1‑149 (MQ=32)                       gtgtTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg                                                  <  1:135283/149‑1 (MQ=32)                       gtgtTGTGAAATGTTGGGTTAAGCCCCGCAACGAGCGCAACCCTTATCTTTTGTGGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAg                                                  <  2:1092696/149‑1 (MQ=17)                       gtgtTGAGACATGTTGGGTGAAGTCCCGCAACGAGCGCAACCCGTATCTTTTGTTGCCAGCGGCCCAGCCGGGAACTCAAAGGAGAATGCCAGTGATAATCTGTAGGAAGGTGGGGATGCCGTCAAGTCATCATGGCTCTTACGACCAg                                                  <  2:1311431/149‑1 (MQ=11)                         gatgtgAAAGGTTGGGTTAAGTCCCGCGACGTGCGCAACCCTTATCTTTTGTTGCCAGCGTTCCGGCCGGGAACTCAAAGCAGACTGCCACTGATAAACTGGAGGAAGGCGGGGATGACGTCGAGTGATCATGGCTCTTACGACCAggg                                                <  1:1188873/147‑1 (MQ=255)                              gAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTaca                                           >  1:409862/1‑149 (MQ=32)                               aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa                                                   >  1:386043/1‑140 (MQ=33)                               aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCa                                                   <  2:386043/140‑1 (MQ=32)                               aaaTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTacac                                          >  1:750764/1‑149 (MQ=32)                                 aTGTTGGGTTAAGTCGCGCAACGAGCGTAACCGTTATCTTTTTGTGCCAGTGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACTTCAAGTCATCATGGCCCTTACGAGCAGGGCGacacac                                        <  2:337221/149‑1 (MQ=11)                                    ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTg                                     >  1:1304048/1‑149 (MQ=32)                                    ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTg                                     <  2:33227/149‑1 (MQ=32)                                    ttGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTg                                     <  2:206974/149‑1 (MQ=32)                                           aaGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAAt                              <  2:791912/149‑1 (MQ=32)                                             gccccGCAACGAGCGCATCCCTTTGCTGTTGTTGCCAGCGGTCGCGACGGTAACGCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGTTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATgg                            <  1:1279361/147‑1 (MQ=11)                                              tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGgc                           <  1:229272/149‑1 (MQ=32)                                              tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGgc                           <  1:593246/149‑1 (MQ=32)                                              tCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGACAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGgc                           <  1:653525/149‑1 (MQ=17)                                               cccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGAGAGACTGAGCGAAAGTGGGGATGACCTCAAGTCATCATGGCCCTTACGACCCGGACGACACACGGGCCACGATGgcc                          >  2:253578/1‑148 (MQ=11)                                                ccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc                                                             >  2:466999/1‑113 (MQ=33)                                                ccGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGcc                                                             <  1:466999/113‑1 (MQ=33)                                                       gAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACaaa                  <  1:660315/149‑1 (MQ=32)                                                       gAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACaaa                  <  1:567594/149‑1 (MQ=32)                                                          cgcAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAagag               <  2:304363/149‑1 (MQ=32)                                                            cAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGaa             <  1:250349/149‑1 (MQ=32)                                                            cAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGaa             <  1:564684/149‑1 (MQ=32)                                                             aaCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGTACTTTAAGGAGTCTGCCAGTGATATACTGGGGGAAGGTGGGGATGACGTCCAGTCATCATGGCCCTTCCGACCTGGGCTACACACGTGCTACATTTGCGCATTCGAAGAGTAg            >  2:763597/1‑149 (MQ=11)                                                             aaCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGAGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAg            >  1:1040395/1‑149 (MQ=17)                                                              aCCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGc           <  1:68981/149‑1 (MQ=32)                                                                gcTTATCTGTTGTTGGCAGGGGGCCGGGCGGGAACGCAAAGGAGAGTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGa         <  2:720570/148‑1 (MQ=11)                                                                ccTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGa         <  2:511786/149‑1 (MQ=32)                                                                       ttttGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTGATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAAGGGCGCATACAAAGAGGGGCGACCTcgcg  >  1:31290/1‑149 (MQ=2)                                                                                                                                                    |                                                                        GCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCTTTTGTTGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCG  >  NC_000913_3_pae_tpiA/224820‑225038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.