| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_pae_tpiA | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_pae_tpiA | 1978503 | 1979278 | 776 | 42 [0] | [0] 43 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1978502 | 0 (0.000) | 41 (0.820) | 40/268 | 0.3 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913_3_pae_tpiA | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
GAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG > NC_000913_3_pae_tpiA/1978356‑1978643 | gAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGCCTGCCA‑CTACACACATCCGGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta < 2:478545‑M1/149‑3 (MQ=255) aaaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat < 2:913293‑M1/149‑4 (MQ=255) tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGACACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg < 1:494570‑M1/149‑23 (MQ=255) cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg < 2:481304‑M1/149‑24 (MQ=255) tCCTAAATCGACGCAACTGTTCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGAGTTTCAATAATGC‑GTGATGCAGATTTCACAAAACACTTAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttca < 2:53563‑M1/149‑34 (MQ=255) cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtttttcaat > 2:531234‑M1/1‑114 (MQ=255) tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatcagtcatacttttgttttgggtgtatttcaatc > 1:752636‑M1/1‑113 (MQ=255) aaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttaaatgtg > 2:191609‑M1/1‑111 (MQ=255) accgaCGGAACTGTACTCGGCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGAGCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt < 1:211361‑M1/147‑40 (MQ=255) tCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta > 2:508490‑M1/1‑109 (MQ=255) tCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta < 1:508490‑M1/111‑3 (MQ=255) aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa < 1:554666‑M1/140‑35 (MQ=255) aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa > 2:554666‑M1/1‑106 (MQ=255) gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa < 1:484839‑M1/149‑46 (MQ=255) aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt < 2:242293‑M1/149‑49 (MQ=255) tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACCCAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtcttgggtgtatttcacactgttaccaagtttt > 2:913987‑M1/1‑99 (MQ=255) tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct > 1:505047‑M1/1‑94 (MQ=255) cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAAAACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaacagtttttcgctgcgcta > 2:872724‑M1/1‑88 (MQ=255) acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc < 1:460844‑M1/149‑64 (MQ=255) acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATGAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa < 1:273434‑M1/149‑70 (MQ=255) tACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaac > 2:372775‑M1/1‑77 (MQ=255) tACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa < 2:102310‑M1/149‑73 (MQ=255) aaCGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaagga > 1:191099‑M1/1‑74 (MQ=255) aaCGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactgtggttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga < 1:179675‑M1/149‑76 (MQ=255) cGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa < 2:809037‑M1/149‑78 (MQ=255) gggggCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatcgaacagga > 2:369490‑M1/1‑67 (MQ=255) ggggCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttttgttatttttgcaagaaaaaatgaaacaggat > 2:563392‑M1/1‑66 (MQ=255) tGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagggataatc > 2:477776‑M1/1‑61 (MQ=255) aataatGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:573912‑M1/1‑51 (MQ=255) aatGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgtt < 2:661022‑M1/149‑102 (MQ=255) tGC‑GTGATGCAGATCACACAAAACACTCAATTAATTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc < 1:729132‑M1/149‑104 (MQ=255) aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttacgcacagtcaaaa > 1:87898‑M1/1‑34 (MQ=255) acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaattttttcgctacgcgcgccagcaaaaatgaaacaggaatgatcgaaatgggatgttgcccacagtcaaaataa < 2:376711‑M1/149‑119 (MQ=255) acaAAACACTCAATTACTTAACATAAATGtataagttatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact > 2:596850‑M1/1‑29 (MQ=255) atcacgtaattacttaACATAAATGtataagtcatacttttgttttccatcttcttcaatctgttaaatagtttttcgctacgatcgcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgtacagtcaaaataactcacc < 2:53963‑M1/142‑125 (MQ=255) accatcaatTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg < 2:505047‑M1/145‑126 (MQ=255) cgcttAACACAAATGtacaagtcatacttttgttttgggtgtatttcaatctgttaaaaagggtttcgcgacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc < 2:421632‑M1/147‑135 (MQ=255) cggaacatAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat < 2:725534‑M1/146‑137 (MQ=255) cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat > 1:839834‑M1/1‑13 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat < 1:88645‑M1/128‑117 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat > 2:88645‑M1/1‑12 (MQ=255) cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaattggatgttgcgcacagtcaaattaactcaccttaaatattcatcttct > 2:420452‑M1/1‑8 (MQ=255) | GAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGC‑GTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG > NC_000913_3_pae_tpiA/1978356‑1978643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |