New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3297025 =	NA (NA)	7 (0.140)	7/270	5.9	11.1%	noncoding (27/84 nt)	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_pae_tpiA	4296321 =	56 (1.110)					noncoding (571/600 nt)	RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites	RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCACCATCGCCCCTGTCAGCCATAA  >  NC_000913_3_pae_tpiA/3296877‑3297166                                                                                                                                                     |                                                                                                                                              ttCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAAAGACTGATGTGTCGCGTGCCGCGTCTTa                                                                                                                                               >  1:407729/1‑149 (MQ=255)   ccTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                                             <  2:753004/149‑1 (MQ=255)    cTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                                                                                            >  1:848149/1‑149 (MQ=255)       aTGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                                         >  1:798117/1‑149 (MQ=255)       aTGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                                         <  1:529122/149‑1 (MQ=255)              gggTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                                                                                                  <  1:330958/148‑1 (MQ=255)                 tGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGAt                                                                                                                               <  2:848149/149‑1 (MQ=255)                 tGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGAt                                                                                                                               <  2:798117/149‑1 (MQ=255)                   aCTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCATGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGAtcc                                                                                                                             >  1:923858/1‑147 (MQ=255)                       tactttaaGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAc                                                                                                                         >  2:719399/7‑149 (MQ=255)                          gTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTTCAACGATACAAACCGt                                                                                                                      >  1:270060/1‑149 (MQ=255)                          gTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGt                                                                                                                      >  2:844890/1‑149 (MQ=255)                           tGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTa                                                                                                                     <  2:452512/149‑1 (MQ=255)                           tGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTa                                                                                                                     <  1:852327/149‑1 (MQ=255)                           tGAAGCGAAAGCGGCGGAAGATATGGCCAGCCGGGTTAGCGGCGTGAAGCGGGTAACTACTGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCCACGCTTGCCGCGTCTTATCATGCCTACAACGATACAAACCGTa                                                                                                                     <  1:698479/149‑1 (MQ=39)                             aaGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCCTAgg                                                                                                                   >  2:328282/1‑149 (MQ=255)                             aaGCGAAAGCGGCCGCAGATATTGCCAGCCGTGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAgg                                                                                                                   <  1:746729/149‑1 (MQ=255)                               gCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGACGCGGCTGCCTACTGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTc                                                                                                                 <  1:27225/149‑1 (MQ=39)                               gCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAATTAGCAGCCCCTTGTAAGGCCCGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTc                                                                                                                 <  2:866170/149‑1 (MQ=255)                                  aaaGCGGCGGCCGATATTGCCAGCCGGGTGGGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGa                                                                                                              <  2:313620/149‑1 (MQ=255)                                      cggcggCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAg                                                                                                          <  1:506556/149‑1 (MQ=255)                                            gaGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTAAGATAAGGCGttt                                                                                                    >  2:866657/2‑149 (MQ=255)                                            cAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTCTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAg                                                                                                                    >  2:900312/1‑133 (MQ=255)                                            cAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAATCGTAGGTCAGATAAGGCGttt                                                                                                    >  1:821868/1‑149 (MQ=255)                                            cAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAg                                                                                                                    <  1:900312/133‑1 (MQ=255)                                             aGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTAAGATAGGGCGTTTa                                                                                                   >  1:510230/1‑149 (MQ=255)                                              gATATTGCCAGGCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAc                                                                                                  <  1:395979/149‑1 (MQ=255)                                               atatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGAGCCGCTTTACACATCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcg                                                                                                 >  1:455084/1‑149 (MQ=255)                                                tatTTCCAACCGGGTGAGCAGCGGGAAGCAGGTAAATACCGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgc                                                                                                <  1:5279/149‑1 (MQ=38)                                                tatTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgc                                                                                                <  2:122505/149‑1 (MQ=255)                                                 atTGCCAGCCGGGTGAGCGGCGTGACGCGGGTAACTACGGCGTTTACGTTTGTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGTCCTACAACGATACAAACCGTAGGTCAGATAAGGCCATTAcgcc                                                                                               >  2:287599/1‑149 (MQ=39)                                                 agtGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                                                                                               <  1:745982/147‑1 (MQ=255)                                                   tGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTAAGTTTAATAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATGCACACCGTAGGTCAGATAAGGCGTTTTccccgc                                                                                             >  2:337461/1‑149 (MQ=37)                                                            ggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACAt                                                                                    >  1:291387/1‑149 (MQ=255)                                                              tGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGt                                                                                  <  1:530784/149‑1 (MQ=255)                                                               gAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGtt                                                                                 >  2:455233/1‑149 (MQ=255)                                                                 gcggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATCAGGCGTTTACGCCGCATCCGACATGtttt                                                                               <  1:792669/149‑1 (MQ=255)                                                                   ggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTcc                                                                             >  1:493767/1‑149 (MQ=255)                                                                          aGCGGGTACCTACGGCGTTTACGTTTATTAAATCGCAGCCCCTTGTAATGCCTGATTCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAt                                                                      <  1:599051/149‑1 (MQ=255)                                                                              ggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACACACCGTAGGTCAGATATGGCGTTTACGCCGCATCCGACATGTCTTCCCTCAAATCAGa                                                                  >  1:439374/1‑149 (MQ=255)                                                                              ggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGa                                                                  <  1:700557/149‑1 (MQ=255)                                                                               gTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGTGACGCTTGCCGCGTCTTCTCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaa                                                                 <  1:863868/149‑1 (MQ=255)                                                                               gTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACCAACCGTAGGTCAGAGAAGGCGTTTACACCGCCTCCGACATGTTTTCCCTCAAATCAGaa                                                                 >  1:708720/1‑149 (MQ=255)                                                                               gTAACCACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGGCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaa                                                                 <  1:457982/149‑1 (MQ=255)                                                                                  aCTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaacaa                                                              <  1:487088/149‑1 (MQ=255)                                                                                    tACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAacaaca                                                            >  1:759414/1‑149 (MQ=255)                                                                                      cGGCGTTTACGTTTATTAAATAGCAGCACCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATAAGACAAACAgc                                                          >  1:324386/1‑149 (MQ=255)                                                                                                gtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCccgc                                                >  1:602780/1‑149 (MQ=255)                                                                                                        aaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCATCCCGCCGACACTc                                        >  2:565658/1‑149 (MQ=255)                                                                                                        aaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCccgccgcacatc                                        >  2:471367/1‑143 (MQ=255)                                                                                                        aaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAGATCACAACCGTAGGTCAGATACGGCGTTTACGCCGCATCCGCCTTGTTTTCCCTCCAATCAAAACCCCACCCCCGGCCCGGCcacacct                                        >  2:733211/1‑146 (MQ=18)                                                                                                            gcagcCCTTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAAATAGGCACAAAGCTTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCacac                                    <  1:455233/149‑1 (MQ=37)                                                                                                                  ccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGACGACAATCACACCaccca                              >  2:659348/1‑145 (MQ=255)                                                                                                                  ccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTGTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGaca                              >  2:587094/1‑149 (MQ=255)                                                                                                                    ttGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGGACAACAGCGCCAGCCCGCCGACAATCACACCAGACACt                            <  2:821868/149‑1 (MQ=255)                                                                                                                       tAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGcc                         <  2:291387/149‑1 (MQ=255)                                                                                                                        aaTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGcca                        <  2:923858/149‑1 (MQ=255)                                                                                                                         aTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGccac                       >  1:677605/1‑149 (MQ=255)                                                                                                                           gCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                                                       >  1:4614/1‑99 (MQ=255)                                                                                                                           gCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCaaa                                                                       <  2:4614/99‑1 (MQ=255)                                                                                                                                         ttGCCGCGTCTTATGAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCACCATCGCCCCTGTCAGc       <  2:323991/149‑1 (MQ=255)                                                                                                                                              gcgTCTTATCAGGCCTACAATGATCCAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCACCATCGCCCCTGTCAGCCATaa  <  1:196130/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              TTCCTGATGGGGCTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGACACTGCCACCATCGCCCCTGTCAGCCATAA  >  NC_000913_3_pae_tpiA/3296877‑3297166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.