| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 632111 = | NA (NA) | 4 (0.120) +CCTTGCGAATTCAATATATTGTATGGAAATTCAGGCCTGATAAGCGTAGCGC |
4/180 | 5.2 | NA | intergenic (+112/‑71) | cstA/ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| ? | NC_000913_3_pae_tpiA | 3676139 = | NA (NA) | noncoding (19/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAA > NC_000913_3_pae_tpiA/3676003‑3676283 | gACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGACCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACCCTTGTCAGGCCTGAAt > 1:154139/1‑149 (MQ=255)gACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCAATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATCAGAGTCAAAAGCCTGATGCACTACGCTTCTCAGGCCTGAAt > 2:627425/1‑149 (MQ=255) ggggTGGGGTTATATCTGGGGGTGGGTGCGGGCTTGACGTTAATCGCCTTGCTGCTGACGCATGGGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGTTGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGaa < 2:431083/147‑1 (MQ=255) gTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTc > 1:386261/1‑149 (MQ=255) gTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCACTGCTGCTGAAACATGAGAAGAGACATGAGTGGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAAttt > 2:576121/1‑148 (MQ=255) tGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTa > 2:509057/1‑149 (MQ=255) tGGCGCCGATGGTGGGTTTGAGGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAACATATTGAATTCGCAAGGATTTGTa < 2:846845/149‑1 (MQ=255) ggcggcGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAg < 1:701132/149‑1 (MQ=255) gtgggtgggTTGCCGTCAATCGTCCTGCTGCTGACCCAGTCGACGAGACACTAGGCGTTGTAATAAGAGGGAAAAGCCTGATGCGCTACGTTTATCAGGCCTTAATTTCCATACAATATATACAATTCGCAAGGTTTTTTAGGCCGTAt < 2:17735/148‑1 (MQ=255) ctggACGTTAACCGCCCTGCGGCTGACCCATGAGACGCGACATCAGTCGTTGTATGAAGAGTGAAAAGCCTGATGCGCGACGTTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt < 2:217022/146‑1 (MQ=38) ctTGACGTTAGTCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTCCTGAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt < 1:688078/149‑1 (MQ=255) cgttaCGTTAAGAGACCTGCCGCGGACCCAAGAGACGAGACATCAGTCGTTGTAATAAGAGCGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt < 2:146634/145‑1 (MQ=37) gTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAgg > 2:851718/1‑85 (MQ=255) gTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAgg < 1:851718/85‑1 (MQ=255) gTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCAcgcc < 2:336226/149‑1 (MQ=255) tcaaTCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCAcgccg < 1:513860/147‑1 (MQ=255) gCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCg > 2:132454/1‑149 (MQ=255) cccTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg > 1:815701/1‑149 (MQ=255) cccTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCAGCATCCgg > 1:750581/1‑149 (MQ=255) ccTGCTGCTGACCCATGAGACGCGACATCCGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc > 2:456203/1‑149 (MQ=255) ctgACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACa < 1:829017/149‑1 (MQ=255) aCCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg < 1:156091/149‑1 (MQ=255) ccATGAGGCGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGca < 2:536407/149‑1 (MQ=255) ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGCATTTCCATACAATATATTGAATTCGCAAGGATTTGTAAGCCGGATAAGTAGTTCACACCGCATCCGGCATGAACAAAGca > 1:83401/1‑149 (MQ=37) ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACACTATATTGAATTATCACGGATTTGCTGGCCGCATAATGCGTTCACGCCGCATCCGGCATGAAccgagcg > 1:261397/1‑143 (MQ=37) ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCCAGGATTTGTAGGCCGGATAAGTCGTTCACGCCGCCTCCGGCATGAACAAAGca > 2:757232/1‑149 (MQ=255) ccATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCGTGTCAGGCCTGAATTTCGATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGca > 2:757514/1‑149 (MQ=255) cATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGTCATGAACAAAGcac > 1:47731/1‑149 (MQ=255) gaCGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACACAGCACACttt > 2:273953/1‑149 (MQ=255) aCGCGACATCAGGCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACACTATATTGAAGTCGGGAGGATTTGTAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCATGAACAAAGCACACTTTg < 1:27979/149‑1 (MQ=37) cgcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc > 2:374176/1‑149 (MQ=255) gACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGTATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaa < 1:734162/149‑1 (MQ=255) aTCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCcaacaa < 1:374176/149‑1 (MQ=255) taataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGt < 2:47731/149‑1 (MQ=255) aataaGAGTGGAAAGCCTGAGGCGCGACGCTTATCAGGCCTGAATTTCCATACAATATAGTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGtt < 1:305313/149‑1 (MQ=255) aataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACCATCTATTGACTTCGCAAAGATTTCTCGCCCGGATAAGAAGTTCACGACAACTCCGGCATGAACAACGCAACCTTTGCCAACAATCTCAATATGtt > 1:893160/1‑149 (MQ=25) ataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGttt > 1:558488/1‑149 (MQ=255) gTGAAAAGCCTGCTGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGc < 1:303527/149‑1 (MQ=255) gAAAGGCTTGATGCGGTACGCTTATCAGGCCTGAATTTCCATACAATATATGGAATGCGCAAGGATGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTTCCAACAATCTAAATCTGTTTAATTGCCg < 2:643342/149‑1 (MQ=25) aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGCTTTGTAGGACGGATAGGGCGTTCAAGACGCCTAAGGCATAACTAAACTAGACCTTGCCAACAATCGTAATCTTTTTAATTGCCgg > 2:82303/1‑149 (MQ=21) aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACACTCTAAAACTGTTTAATTTCCgg > 2:394410/1‑149 (MQ=255) cTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCa < 1:801097/149‑1 (MQ=255) gcTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATcc > 2:830170/1‑149 (MQ=255) gcgcaTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCaa < 2:509990/145‑1 (MQ=255) gCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCaa < 1:132454/149‑1 (MQ=255) | GACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCCGGATGTCAGACATCCGGCAA > NC_000913_3_pae_tpiA/3676003‑3676283 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |