| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1217114 | 111 (1.000) | 15 (0.150) | 13/244 | 11.0 | 13.2% | intergenic (+118/‑214) | ymgC/ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913_3_pae_tpiA | = 1217120 | 99 (1.010) | intergenic (+124/‑208) | ymgC/ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1216953‑1217114‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcaagaatggagagCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGGATTCCCTGT < NC_000913_3_pae_tpiA/1217120‑1216974 TAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTC > 4:373987/1‑150 ACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAA < 1:1124429/150‑1 GATATCATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAA > 3:398723/1‑150 TATCATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATG < 1:65102/150‑1 ATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATTTCCGCAATATCAGGTGTCAAGAAT > 2:764488/1‑145 ATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATTTCCGCAATATCAGGTGTCAAGAAT < 1:764488/145‑1 ATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGA < 1:1185157/150‑1 ATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAG < 2:1210240/149‑1 ATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAG > 1:1210240/1‑149 TTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGGAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAG > 3:174065/1‑150 ATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCGAGAA < 2:1113919/150‑1 TGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCGAGAAC > 1:1148768/1‑150 AATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGCGTCAAGAATGGAGAGCGAGAACTCTCCATT < 4:430010/150‑1 ATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCGAGAACTCTCCATTC < 1:774578/150‑1 aAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGCGTCAAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATA < 3:741257/149‑1 CTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCTCCCTGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAAGATCAGGGGTCAAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCG < 1:877024/150‑1 TTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCGAGAACTCTCCATTCT > 4:250145/1‑132 TTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCGAGAACTCTCCATTCT < 3:250145/132‑1 TTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAG > 3:475299/1‑101 TTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAG < 4:475299/101‑1 CAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTG < 2:1148768/150‑1 CATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCGAGAACTCTCCATT > 2:1051146/1‑93 CATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCGAGAACTCTCCATT < 1:1051146/93‑1 TGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGCGTCAAGAATGGAGAGCGAGAACTCTCCATT < 1:567065/88‑1 TGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGCGTCAAGAATGGAGAGCGAGAACTCTCCATT > 2:567065/1‑88 ATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGTATAACGCCTGAAATGCTCACTTTGCATCA > 2:765271/1‑150 CAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTG < 1:765271/150‑1 GTCAAGAATGGAGAGCGAGAACTCTCCATTCTTGCCACCTGATACTGCGAACATCATAAGAATACATAACACACGCAATGCTAACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCA < 1:421192/150‑1 GTCAAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCA > 2:1201803/1‑150 GTCAAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCA > 1:427800/1‑150 TCAAGAGTGGAGAGCGAGAACTCTCCATCCTTGACAGCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGTAATCCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTCCTCGCGTTCTAAGAGAGCAC > 4:177971/1‑150 CAAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACG < 2:964395/150‑1 AAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGG > 2:943648/1‑150 AAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGG < 3:340021/150‑1 AAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGG > 1:319391/1‑150 AAGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGG > 1:1054769/1‑150 AGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATACGAACGCCTAACGCATGAAATGCCCCCTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGGA < 1:1153443/150‑1 AGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAGCGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGGA > 1:648458/1‑150 AGAATGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGGA < 3:121722/150‑1 TGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGGATTCC < 2:78300/150‑1 TGGAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGGATTCC < 1:242053/150‑1 GAGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGGATTCCCT > 2:438777/1‑150 AGAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGGATTCCCTG > 2:9437/1‑150 GAGCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGGATTCCCTGT > 2:1061829/1‑150 TAACGGATATCATTATTAATGACAGGGAATCCGTGCTCTCTTAGAACTTGAGTAAGGTTTTAGAATAAACATCAGCTGTATCACCATGCTGATGCAAAGTGAGCATTTCAGGCGTTATGCTTTCTTATTATGTCCGCAATATCAGGTGTCAAGAATGGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1216953‑1217114‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcaagaatggagagCGAGAACTCTCCATTCTTGACACCTGATATTGCGGACATAATAAGAAAGCATAACGCCTGAAATGCTCACTTTGCATCAGCATGGTGATACAGCTGATGTTTATTCTAAAACCTTACTCAAGTTCTAAGAGAGCACGGATTCCCTGT < NC_000913_3_pae_tpiA/1217120‑1216974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |