New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 225275NA (NA)24 (0.220) 17/274 10.5 NA noncoding (1505/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913_3_pae_tpiA = 225299 NA (NA)noncoding (1529/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
Rejected: Coverage evenness skew score above cutoff.

AGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCT  >  NC_000913_3_pae_tpiA/225204‑225353
                                                                       |                                                                              
agcaggttgGTTAACTTTCTTTAGGGCGGTTACCACGTTGTAATTCAAGACTGTGGTGTAGTATTAACAAGGTAACCGTAGGGAAACGTTCGGTTGGATCACCTTGTTCCCTTAAAGAAGCGTAGTTTGCAGTGCTCACATTGATTGTCt  <  4:15822/147‑1 (MQ=0)
                                                                       |                                                                              
AGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCT  >  NC_000913_3_pae_tpiA/225204‑225353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.