BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_pae_tpiA	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_pae_tpiA	1978503–1979270	1979278	9–776	133 [0]	[0] 134	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1978502	0 (0.000)	125 (1.130)	83/264	0.2	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913_3_pae_tpiA	1979279 =	0 (0.000)	125 (1.130)	83/264	0.2	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 134 total aligned reads displayed.

ATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAA  >  NC_000913_3_pae_tpiA/1979135‑1979427

tctggtctttacacttttctaagattttgcctaatctgacgcaactgtactcgtcactacacgcacatacaacggaggggggcttcgattttcaataatgcgtgatgcagatcacacaaaacactcgagtacttaacataaatgTATaa                                                                                                                                                   <  2:41598‑M2/5‑1 (MQ=255)

  gggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                                 <  1:1868729‑M2/7‑1 (MQ=255)

    gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagctcacacaacccacttaattactcaacaaaaatgtataaaaga                                                                                                                                               >  1:41598‑M2/141‑145 (MQ=255)

    gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                               >  1:2019422‑M2/141‑149 (MQ=255)

    gtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                               >  2:1540664‑M2/141‑149 (MQ=255)

         ttcatctatcgaatattgttcctaaatcgacggaactgtgctcgtcactacacgcacatacgacggaggggggctgcgatttgcaataaggcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtt                                                                                                                                          <  2:73045‑M2/14‑1 (MQ=255)

           cacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaagggaggggggctgcgattttcaataatgcgtgatgcagatcacccaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                                        >  1:1999190‑M2/134‑149 (MQ=255)

            acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                                                                       <  2:892033‑M2/17‑1 (MQ=255)

              ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                                     <  1:1570864‑M2/19‑1 (MQ=255)

              ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacacacatacaacggaggggggatgcgattttcaataatggttggtgcatatcacacaaaacactcaattacttaacataaattTTAACTTCATACttttgtt                                                                                                                                     >  2:233982‑M2/131‑149 (MQ=255)

                atctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt‑t                                                                                                                                  <  1:1295517‑M2/21‑1 (MQ=255)

                   taagatttttcctaaatcgacgcaactgtactcgtcactacacgcatatacaacggaggggggctgccattttcaataatgcgttatgcagatcacacaaaacactcaattacttaacataaacgTATAAGTCATACTTTTGTTT‑Tggg                                                                                                                               >  1:1882434‑M2/126‑149 (MQ=255)

                   taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑Tggg                                                                                                                               >  2:440478‑M2/126‑149 (MQ=255)

                    aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatacatgTATAAGTCATa                                                                                                                                             <  2:1890670‑M2/11‑1 (MQ=255)

                    aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                             >  1:1890670‑M2/125‑135 (MQ=255)

                    aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGgt                                                                                                                              >  1:123411‑M2/125‑149 (MQ=255)

                      gatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttaaataatgcgtgatgcagatcacacaatacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGgtgt                                                                                                                            <  2:421889‑M2/27‑1 (MQ=255)

                        tttttccgaaatcgacgcaacggtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacacaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTAt                                                                                                                          <  1:1785904‑M2/29‑1 (MQ=255)

                          tttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTAttt                                                                                                                        <  2:1072696‑M2/31‑1 (MQ=255)

                              ctaaatctacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAAt                                                                                                                    <  1:1159943‑M2/35‑1 (MQ=255)

                              ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAAt                                                                                                                    >  1:734120‑M2/115‑149 (MQ=255)

                               taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTCTAAGTCATACTTTTGTTT‑TGGGTGTCTTTCAatg                                                                                                                   >  1:36443‑M2/114‑148 (MQ=255)

                               taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATc                                                                                                                   >  2:1252009‑M2/114‑149 (MQ=255)

                               taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATc                                                                                                                   >  1:207484‑M2/114‑149 (MQ=255)

                               taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTG‑TGGGTGTATTTCAATc                                                                                                                   >  1:746456‑M2/114‑149 (MQ=255)

                                  atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCATTCTGt                                                                                                                >  1:156759‑M2/111‑149 (MQ=255)

                                  atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCt                                                                                                                  >  2:843007‑M2/111‑147 (MQ=255)

                                   tcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGtt                                                                                                               >  1:151204‑M2/110‑149 (MQ=255)

                                       cgcaactgtactcctcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTaaaa                                                                                                           <  1:282709‑M2/44‑1 (MQ=255)

                                        gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTaaaaa                                                                                                          <  2:1398743‑M2/45‑1 (MQ=255)

                                             tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                                        <  1:1752852‑M2/16‑1 (MQ=255)

                                             tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                                        >  2:1752852‑M2/100‑115 (MQ=255)

                                              gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacattcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                                    <  2:1907822‑M2/51‑1 (MQ=255)

                                              gtactcgtcactacacgcacatacaacggaggggggctgccattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                                    <  2:1460648‑M2/51‑1 (MQ=255)

                                               tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtt                                                                                                                                          <  2:1981874‑M2/14‑1 (MQ=255)

                                               tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtt                                                                                                                                          >  1:1981874‑M2/98‑111 (MQ=255)

                                               tacccgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgCATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                                   <  2:1066587‑M2/52‑1 (MQ=255)

                                                  tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaacgtat                                                                                                                                                     <  1:1125631‑M2/3‑1 (MQ=255)

                                                  tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaacgtat                                                                                                                                                     >  2:1125631‑M2/95‑97 (MQ=255)

                                                    gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑Tgg                                                                                                                                >  1:85006‑M2/93‑115 (MQ=255)

                                                    gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑Tgg                                                                                                                                <  2:85006‑M2/23‑1 (MQ=255)

                                                    gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac                                                                                              >  2:1113351‑M2/93‑149 (MQ=255)

                                                    gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac                                                                                              >  1:563688‑M2/93‑149 (MQ=255)

                                                    gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac                                                                                              >  1:329601‑M2/93‑149 (MQ=255)

                                                     tcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATCACTGAT‑GTTGCGTTTGAGGGTATATTTCATTTTGTTAAAAAGTTTTTcgctacg                                                                                             >  1:1525231‑M2/92‑149 (MQ=255)

                                                       actacacgcacatacaacggagggaggctgcgattttccataatccgcgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TCGGTGTATTTCAATGTGTCAAAACCtttttcgctcagct                                                                                           >  2:1023323‑M2/90‑144 (MQ=255)

                                                         tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                                                                         >  1:1405722‑M2/88‑149 (MQ=255)

                                                          acacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                                        >  2:1073824‑M2/87‑149 (MQ=255)

                                                          acacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                                        <  1:1705062‑M2/63‑1 (MQ=255)

                                                              gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGATACGCTagcgagc                                                                                    >  1:814550‑M2/83‑149 (MQ=255)

                                                               cacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagca                                                                                   >  1:357060‑M2/82‑149 (MQ=255)

                                                                acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                                                                  >  2:1775103‑M2/81‑149 (MQ=255)

                                                                  atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTTTTT‑TGGGTGTATTTCAATCTGTTAAAAACTTTTTCGCTACGCACGCATGcaaac                                                                                >  2:1681148‑M2/79‑148 (MQ=255)

                                                                   tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcgattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                               >  1:1845816‑M2/78‑149 (MQ=255)

                                                                   tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                               >  1:1075167‑M2/78‑149 (MQ=255)

                                                                      aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                                                                            >  2:2042056‑M2/75‑149 (MQ=255)

                                                                        cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑Tgg                                                                                                                                <  2:1100625‑M2/23‑1 (MQ=255)

                                                                             gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                          <  1:1769460‑M2/77‑1 (MQ=255)

                                                                              ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaa                                                                    <  2:130201‑M2/83‑1 (MQ=255)

                                                                              ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaa                                                                    >  1:1741751‑M2/67‑149 (MQ=255)

                                                                                  ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                                <  1:604004‑M2/87‑1 (MQ=255)

                                                                                  ctgcgattttcaataatgcgtgatgcagatcacacaaaaacctaaatgactgaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                                <  1:1726910‑M2/87‑1 (MQ=255)

                                                                                   tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                                 <  1:1048811‑M2/7‑1 (MQ=255)

                                                                                   tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc                                                               <  1:149104‑M2/88‑1 (MQ=255)

                                                                                   tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc                                                               >  2:313897‑M2/62‑149 (MQ=255)

                                                                                       attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCACGCAAAAATGAAACAGTAATAATCGaaa                                                           >  1:1246912‑M2/58‑149 (MQ=255)

                                                                                       attttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa                                                           <  1:356021‑M2/92‑1 (MQ=255)

                                                                                        ttttcaataacgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTAAGCTAGAAGGCAAAAATTTAATTGGAATAATCGAAAt                                                          >  1:2030606‑M2/57‑149 (MQ=255)

                                                                                             aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                                     >  1:1441971‑M2/52‑149 (MQ=255)

                                                                                                 atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTg                                                 >  1:1102199‑M2/48‑149 (MQ=255)

                                                                                                       gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                           <  1:1605333‑M2/108‑1 (MQ=255)

                                                                                                           cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATGCTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa                                       >  1:953210‑M2/38‑149 (MQ=255)

                                                                                                             gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                                     >  1:1940822‑M2/36‑149 (MQ=255)

                                                                                                             gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                                     >  1:1977049‑M2/36‑149 (MQ=255)

                                                                                                              atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTTTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGATAGCAAGCAAAAATAAAACAGCAATAACCGAAACTGGATGTTGCTCACAGTCaaaa                                    >  2:1044960‑M2/35‑149 (MQ=255)

                                                                                                              atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTaaaa                                                                                                           >  2:1951189‑M2/35‑78 (MQ=255)

                                                                                                              atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAACAGTTTTTCGCTACGCTAGCAAGCAAAACTGAAAAAGGAATAATCGAAATGGGATGTGTCACACACtcaaca                                    >  2:1045139‑M2/35‑147 (MQ=255)

                                                                                                                   acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                                        <  1:1437306‑M2/95‑1 (MQ=255)

                                                                                                                   acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                                        >  2:1437306‑M2/30‑124 (MQ=255)

                                                                                                                     aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                             <  2:1722492‑M2/122‑1 (MQ=255)

                                                                                                                     aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAAGGGATGGTGCGCACGGTCAAAATAACTCa                             >  2:965508‑M2/28‑149 (MQ=255)

                                                                                                                       aacgctcaagtacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc                           <  1:1789485‑M2/124‑1 (MQ=255)

                                                                                                                       aacactcaattacttaacataaatgTATAGGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc                           <  1:1791397‑M2/124‑1 (MQ=255)

                                                                                                                          actcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATCAAACAGGAATAATCGAAATGGGATGTTGCGCCCAGTCAAAATAACTCACCGTa                        >  2:618490‑M2/23‑149 (MQ=255)

                                                                                                                            tcaattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa                      <  1:907622‑M2/129‑1 (MQ=255)

                                                                                                                              aattacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTCTTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata                    >  2:928450‑M2/19‑149 (MQ=255)

                                                                                                                                ttacttaacataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaataat                  >  1:581969‑M2/17‑149 (MQ=255)

                                                                                                                                 taattaaaataaatgTATAAGTAATAATTTTGTTT‑TGGGTGTATTTAAATCTGTTAAAAAGTTTTTCGCTCCGCTAGCAAGCAAAAATGAAACAGGAAAAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc                 <  2:1532579‑M2/134‑1 (MQ=255)

                                                                                                                                   cgtaacataaatgTATAAGGCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat               <  2:1865332‑M2/136‑1 (MQ=255)

                                                                                                                                       acataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc           <  1:440478‑M2/140‑1 (MQ=255)

                                                                                                                                       acataaatgGATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTAACATGAAATCGCCTTAAGTAATCAGCTGc           <  2:2019422‑M2/140‑1 (MQ=255)

                                                                                                                                       acataaaggTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc           <  2:573833‑M2/140‑1 (MQ=255)

                                                                                                                                         ataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                                    >  2:229307‑M2/8‑58 (MQ=255)

                                                                                                                                         ataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCta         >  2:1805925‑M2/8‑149 (MQ=255)

                                                                                                                                         ataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCta         >  1:1766847‑M2/8‑149 (MQ=255)

                                                                                                                                         ataaatgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCta         <  2:151204‑M2/142‑1 (MQ=255)

                                                                                                                                             atgTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaa     <  2:156759‑M2/146‑1 (MQ=255)

                                                                                                                                               gTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTctaaata   >  1:331079‑M2/2‑149 (MQ=255)

                                                                                                                                               gTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaata   >  1:1866420‑M2/2‑149 (MQ=255)

                                                                                                                                                tataAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaataa  <  1:1073824/149‑1 (MQ=255)

ATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTT‑TGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAA  >  NC_000913_3_pae_tpiA/1979135‑1979427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`