New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 3632763	37 (0.820)	5 (0.120)	5/266	5.6	12.5%	noncoding (3632763/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 3632776	36 (0.870)					noncoding (3632776/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGAATACATAGTTAACATTTTATCTTATGACATACACCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTT  >  NC_000913_3_vch_tpiA/3632617‑3632905                                                                                                                                                   |                                                                                                                                               ggAATACATAGTTAACATTTTATCTTATGACATACACCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGt                                                                                                                                              >  2:49936/1‑149 (MQ=255)      aCATAGTTAACATTTTATCTTATGACATACACCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGtcatca                                                                                                                                         >  2:397832/1‑149 (MQ=255)        aTAGTTAACATTTTATCTTATGACATACACCCCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATGCAGCCTCAAAGCATAATATGAAATTTCTTCTCTCATACCAAAAAAAGTCCCTAAAGGTCGTCGAGGCGtcatcaca                                                                                                                                       >  2:47312/1‑147 (MQ=255)             tAACATTTTATCTTATGACATACCCCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAACGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATg                                                                                                                                  >  2:385063/1‑149 (MQ=255)                    ttATCTTATGACATACACCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTAc                                                                                                                           >  1:48246/1‑149 (MQ=255)                        cTTATGACATACGCCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGGATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATc                                                                                                                       <  2:129260/149‑1 (MQ=255)                          tATGACATACACCTCATGTTCGATGGGAAAATAATTATATTTTGCAAAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTCGATTCGTCATCAGAACATGCCTCTACAATCGa                                                                                                                     <  1:777395/149‑1 (MQ=255)                                    acCTCATGTTCGATGGAAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAAc                                                                                                           <  2:189545/149‑1 (MQ=255)                                         agcttCGTTGGGAAAATAATTATATTTTGCACAAATCATTCACCCTCCAAGCATAATATGAAATTTCTTATCTCCTCGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATg                                                                                                      <  1:162773/146‑1 (MQ=255)                                              cggtGGGAAAATAATTATATTTTGCACAAATCATTCATCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAAGCGATTAAGAAAACATTTGacgga                                                                                                 <  2:97302/146‑5 (MQ=255)                                                 tGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTg                                                                                              <  2:655542/149‑1 (MQ=255)                                                    gAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATAAAATACTGGCa                                                                                           >  2:3473/1‑149 (MQ=255)                                                             tataTTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTAAAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTaaaa                                                                                  >  1:734029/1‑149 (MQ=255)                                                                  attGCACAAATCCTGCAGCCTCAAAGCATAATATGATGTTTCTTTTCTCGTAGCAGAGAGAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTATACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACa                                                                             >  2:582760/2‑149 (MQ=255)                                                                   ttGCACAAAACATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACAt                                                                            <  2:697292/149‑1 (MQ=255)                                                                        caAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATaccac                                                                       >  2:127758/1‑149 (MQ=255)                                                                         aaaTCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATaccacc                                                                      >  1:160561/1‑149 (MQ=255)                                                                         aaaTCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATaccacc                                                                      >  2:301481/1‑149 (MQ=255)                                                                                   gCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATgg                                                            <  1:742002/149‑1 (MQ=255)                                                                                       aaaaGCATAATATGAAATTTCTAATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAACAAAATCTATGAAATACTGGGAGGATTAAAAAGACATACCACCGTATTCATGGAGtt                                                        <  2:63006/148‑1 (MQ=255)                                                                                        aaaGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGttt                                                       >  2:384319/1‑149 (MQ=255)                                                                                              taataTGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGt                                                 >  1:241332/1‑149 (MQ=255)                                                                                                  atGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGtt                                             <  1:127758/149‑1 (MQ=255)                                                                                                       aTTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGaaaa                                        <  1:315732/149‑1 (MQ=255)                                                                                                         ttattATCTCATAGCAGAGAAAGTCGCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAaaca                                      <  2:695994/146‑1 (MQ=255)                                                                                                          tCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAg                                                          <  2:288415/128‑1 (MQ=255)                                                                                                          tCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAg                                                          >  1:288415/1‑128 (MQ=255)                                                                                                          tCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAaacaa                                     <  1:49936/149‑1 (MQ=255)                                                                                                            ttATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTCCAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCCCCGTATTCATGGAGTTTTAATGTAATTGAAaacaccc                                   >  2:488539/1‑146 (MQ=255)                                                                                                                   agaGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCt                            <  1:172421/147‑1 (MQ=255)                                                                                                                        agagAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACCACGGAGCCCGGAggt                       >  2:545311/1‑148 (MQ=255)                                                                                                                                  ccTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAattatt             <  1:638388/149‑1 (MQ=255)                                                                                                                                   cTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAAACGCTTAAGAAAACCTATGAAATACTAGCAGGATAAAAACGACATACCACCGTATTCATGGAGTTTTAATGTAGTTATAAACAACTAAGCCCTGACGAATAAatcattt            >  2:24139/1‑149 (MQ=255)                                                                                                                                    tAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAattatttt           >  1:348046/1‑149 (MQ=255)                                                                                                                                        gATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAattattttatta       >  1:777030/1‑149 (MQ=255)                                                                                                                                            gTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAattattttattatttt   <  1:384319/149‑1 (MQ=255)                                                                                                                                             tAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTAttttt  >  1:618909/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                               GGAATACATAGTTAACATTTTATCTTATGACATACACCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTT  >  NC_000913_3_vch_tpiA/3632617‑3632905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.