New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3423376 =	50 (1.110)	10 (0.220)	7/286	5.0	20.1%	noncoding (3423376/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4213192	30 (0.670)					noncoding (4213192/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.

TAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGG  >  NC_000913_3_vch_tpiA/4213058‑4213340                                                                                                                                       |                                                                                                                                                     tAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACACCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGGAGGGAACTGCCAGGCATCAAATTAGAAAAAcccc                                                                                                                                        >  1:358167/1‑149 (MQ=255)   aaaCAGAACTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCGCCCCATGCGAGAGTACGAAACTGCCAGGCATCAAATTAGAAAAACCCCgg                                                                                                                                      <  1:595526/149‑1 (MQ=255)          aTTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGATCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATaa                                                                                                                               <  1:593163/149‑1 (MQ=255)                 gggcggcAGGAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCggg                                                                                                                        <  2:502058/148‑1 (MQ=255)                   gcggcAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAACCCCCGGTGCATAAGGCCGGGGt                                                                                                                      >  1:703437/1‑149 (MQ=255)                           aGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCa                                                                                                              >  1:755657/1‑149 (MQ=255)                             cgcgGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCata                                                                                                            <  2:647437/149‑1 (MQ=255)                                          acTGACCGCAGGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGGTGGTAGTGTGGAGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGACGGGGTTTTTTGCCTCTACATTATGTGCa                                                                                               >  2:248923/2‑149 (MQ=17)                                             gcccccCTGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCatga                                                                                            <  1:208263/147‑1 (MQ=255)                                                 ccATGCCGAACTCAGAAGTGAATCGCCGTAGCGCCGATGGTAGTGTGGGGTATACACATGCGAGAGTAGGGAACTGCAAGACATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCAGGATGaa                                                                                        <  1:30975/149‑1 (MQ=21)                                                  cATGCCGAACGCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAACAACCCCGTTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAg                                                                                       <  2:3795/149‑1 (MQ=255)                                                    tggtgatcTCAGAAGTGAAACGCCGTAGCGCGGATGGTAGTGTGGGGTCTGCCCATGTGAGAGTAGGGAACTCCCAGGCATCAAATTCGAAATACGCCTGTCGATAAGGCCGGGAATTTTTGAAAACCAATTCTTTGTATGATGAAggg                                                                                     >  2:449522/8‑149 (MQ=17)                                                    tGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAggg                                                                                     >  1:391010/1‑149 (MQ=255)                                                                aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCa                                                                         >  2:641480/1‑149 (MQ=255)                                                                   tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGtt                                                                      <  2:755657/149‑1 (MQ=255)                                                                       aCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGt                                                                  >  2:763848/1‑149 (MQ=255)                                                                            gTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATc                                                             <  1:48159/149‑1 (MQ=255)                                                                                 gcCGATGGTAGTGTTGGGTCTCCCCAAACAAGAGTAGGGAACAGCCATGCATCAAATTAGAAAAACCAGAGTCCATAAGGCGGGGGTTTTTTGGATATCAATTATTTACATAATGAAGGGAATCTCATTACAGCTCTGTATATcaacat                                                        >  2:28253/1‑144 (MQ=255)                                                                                    gATGGTAGTGTGGAGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCGAATtcg                                                     >  1:642990/1‑149 (MQ=255)                                                                                              tgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCaa                                           >  1:459166/1‑149 (MQ=255)                                                                                              tgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGGTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCaa                                           >  1:132789/1‑149 (MQ=255)                                                                                                       cccATGCGAGAGTAGGGAACTGCCAGGCATCAAATTCGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGtt                                  >  2:401350/1‑149 (MQ=255)                                                                                                        ccATGCGAGAGTAGGGAACTGCCAGGCATCACATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGAGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTc                                 >  2:268636/1‑149 (MQ=255)                                                                                                                gagTAGCGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTTCATGATGAAGGGAAGCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCtt                         <  1:293407/149‑1 (MQ=255)                                                                                                                    aGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGaaa                     <  2:391010/149‑1 (MQ=255)                                                                                                                     gggAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAg                    >  1:40016/1‑149 (MQ=255)                                                                                                                       gAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCa                  >  1:215205/1‑149 (MQ=255)                                                                                                                          ctgaccggCATCAAATTAGAAAAACCCCGTTCCAAAAAGCCGGGGGTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAAc               <  1:610518/143‑1 (MQ=255)                                                                                                                             ccAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTg            >  1:436033/1‑149 (MQ=255)                                                                                                                                       aaTTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGTTCTTGAAAGCAAACGTGAAGTGTCAgg  >  1:391520/1‑149 (MQ=255)                                                                                                                                       |                                                                                                                                                     TAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGG  >  NC_000913_3_vch_tpiA/4213058‑4213340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.