New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3915733 =	36 (0.800)	4 (0.090)	4/284	6.4	9.7%	noncoding (3915733/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	3915808 =	39 (0.880)					noncoding (3915808/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGT  >  NC_000913_3_vch_tpiA/3915662‑3915956                                                                                                                                                   |                                                                                                                                                     tctTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGttt                                                                                                                                                    <  2:223289/149‑1 (MQ=255)   ttCAGCCTTACGTTTCGCTTCCAATGCTCGCGCTTCGTCGCGATCCTGGCCGCGAATTGCGGTGTCGCCCAAACCGGCAACGTTCCCAGACTGCACTTTACGAATGCCGGAGGACAGATAGACAAACACTCAGTGACCCTGCTGTTACa                                                                                                                                                  >  2:529768/1‑149 (MQ=255)    ttaGCCGTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATGGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCAc                                                                                                                                                 <  2:783664/147‑1 (MQ=255)               tttCGCTTCCATGGCTCGCGCTTCGACGACATTAATGCTGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCa                                                                                                                                      >  1:776770/1‑149 (MQ=255)                   gCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATAcc                                                                                                                                  >  1:197394/1‑149 (MQ=255)                   gCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATAcc                                                                                                                                  <  1:508372/149‑1 (MQ=255)                     ttCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGATAGGCCACCTTGCCCCGCTGTACTTTAAAAATGTCGCCCCTCAGTTAGTTGAACTCTTCGTAATCTAGCTGTTTCACGATGCGAATCATACCac                                                                                                                                >  2:657775/1‑148 (MQ=255)                     ttCCACGCCCCGCGCTTCTGCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGCCAGATAGATAAACTCTTCATGCCCGTGCCGTTTCCCGATCCGCAACCTAcccg                                                                                                                                >  2:291742/1‑147 (MQ=255)                         aTGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATGGATAAACTCTTCGCGACCGTCCTGCTCCACCATGCGAATCATACCAGGCtt                                                                                                                            >  1:289253/1‑149 (MQ=255)                           ggCTCGCGCTTCGTCGAGATCCCGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTaa                                                                                                                          <  2:210725/149‑1 (MQ=255)                              tCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATgg                                                                                                                       <  1:637957/149‑1 (MQ=255)                                gcgcTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGACTGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCCCGATGCGAATCATACCAGGCTTAATGGCg                                                                                                                     >  2:24807/1‑149 (MQ=255)                                    ttCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGa                                                                                                                 >  1:619373/1‑149 (MQ=255)                                    ttCGGCGAGATCCTGGCCGCGAATTGAGGTGTCGGCAACAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGa                                                                                                                 <  2:435584/149‑1 (MQ=255)                                       gtcgAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGagca                                                                                                              <  1:520204/149‑1 (MQ=255)                                          gagaTCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGGTGCATTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGGTGTTTCCCGATGCGAAACATACCAGGCTTAATGGCGGTGAGCAGCg                                                                                                           >  2:3619/1‑149 (MQ=255)                                                 tGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGAGGTGCGTg                                                                                                    >  1:285433/1‑149 (MQ=255)                                                   gCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGc                                                                                                  >  2:555731/1‑149 (MQ=255)                                                     cgcgAAGTGCGGGGTCGGCCAGAACGGTCACGGTGCCAGGCTGCACATCAAGGATGCCGCCAGACATATAGATAATCTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCa                                                                                                <  1:105373/149‑1 (MQ=255)                                                          atcgCGGGGTCGGCCAGAACTGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGGGACCGTGCTGTCTCACGATGCGAATCATACCACGCTTAATGGCCGTGAGCAGCGGTGCGTGGCCAGGGTa                                                                                           <  2:139177/146‑1 (MQ=255)                                                                  gtCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCa                                                                                   <  1:347930/149‑1 (MQ=255)                                                                       ccAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCgg                                                                                                                    >  1:355740/1‑111 (MQ=255)                                                                       ccAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCgg                                                                                                                    <  2:355740/111‑1 (MQ=255)                                                                              ggTCACTTTGTCAGGTTGCGCTTCAGTAATGGCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGATTCATTCCAGGCTTAATGGCGGTGAGCAGCGGTGCGTTGCCAGGGTAGATCCCCAGTTCACCTTCGc                                                                       <  2:251800/149‑1 (MQ=255)                                                                                           ggCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTg                                                          >  2:198558/1‑149 (MQ=255)                                                                                              tGCACTTCAAGAATGCCGTCTGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGAt                                                       <  2:591091/149‑1 (MQ=255)                                                                                              tGCACTTCAAGAAGGCGGCCAGACAGATAGATAAAGTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGAt                                                       <  2:354209/149‑1 (MQ=255)                                                                                                cACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCCCCTTCGCTACCCGTTACCTGGAttt                                                     >  2:281029/1‑149 (MQ=255)                                                                                                 aCTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGAtttt                                                    >  1:243941/1‑149 (MQ=255)                                                                                                    tCAAAAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTtctc                                                 <  1:467620/149‑1 (MQ=255)                                                                                                      aaGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCga                                               <  1:755755/149‑1 (MQ=255)                                                                                                               gccAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGaccagaccag                                      >  1:528434/1‑149 (MQ=255)                                                                                                                ccAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGAccagaccaga                                     <  2:243941/149‑1 (MQ=255)                                                                                                                           gataAACTGTTCGTGAGCGTGATGTCTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCTCCAGGTCCCCTTCGCTACCCGTTACCTCGATTTTCTCGACCAGACCAGAGAACATttgtt                          <  2:351568/149‑1 (MQ=255)                                                                                                                             taAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACCTTTGTTGc                        >  2:666054/1‑149 (MQ=255)                                                                                                                               aaCTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGctc                      <  2:776770/149‑1 (MQ=255)                                                                                                                                       gTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTga              <  1:198558/149‑1 (MQ=255)                                                                                                                                       gTGACCGCGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGCGCGTGGCCAGGGTAGATCCCCAGTTCACCCTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTga              <  2:84612/149‑1 (MQ=255)                                                                                                                                          aCCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTgacga           <  1:657775/149‑1 (MQ=255)                                                                                                                                                 tGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAg    <  2:289253/149‑1 (MQ=255)                                                                                                                                                   tttCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAggt  >  1:646211/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGT  >  NC_000913_3_vch_tpiA/3915662‑3915956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.