| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 1068445 = | 26 (0.890) | 4 (0.140) | 4/272 | 3.6 | 10.6% | noncoding (92/98 nt) | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 4249453 = | 43 (1.540) | noncoding (103/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATCGC > NC_000913_3_vch_tpiA/1068306‑1068588 | aTCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAGGCTTGCCTGATGCGCGATGCTTGTCAGACCTACCAGAAGATTGCAATATATTGAATTTGCACTTGTTTGTAGCGCGGATACGCCGTTTAGGCCGCATCCggggtg > 2:48761/1‑145 (MQ=25) aaccaccgGGTAACCGGCGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt < 2:51683/141‑1 (MQ=25) aaccaccGGGTAACCGGCGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt < 2:53515/145‑1 (MQ=25) cgccgGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTAGCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAAGCGTTTACGCCACATCCGGCATGAACaa > 2:171172/1‑149 (MQ=255) tACCCGGTGGTTTATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCATGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTAc < 2:379103/149‑1 (MQ=255) aTACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATc < 1:166261/149‑1 (MQ=255) aaaTGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCgg > 1:394127/1‑149 (MQ=255) gCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTGTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCACCAATCTGCACCGCCGGCAACCCcg > 2:329031/1‑149 (MQ=255) ctgtttcgcgATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGTATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGtt < 1:337417/143‑1 (MQ=255) gATGCGCGATGGTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGtttt > 1:324620/1‑149 (MQ=255) gcgATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGtt < 1:406135/149‑1 (MQ=255) ttATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTCCTGTTTATGGCt > 1:70561/1‑149 (MQ=255) aGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCtga < 2:145583/149‑1 (MQ=255) cTACCAGAAGATTGGAATATATTGAATTTGCACTGTTTTGTAGGCCGGGTAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGaa < 2:25181/149‑1 (MQ=255) cTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGaa < 1:91670/149‑1 (MQ=255) cTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGaa > 2:91670/1‑149 (MQ=255) cAGAAGATTGCAATATAATGAATTTGCACTGTTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGCCTCCTGAGGaacgac > 2:164928/1‑149 (MQ=37) gaagaTTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACtt > 2:92663/1‑149 (MQ=255) cAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTGAACAATGCGTCCGTTGTCAACAATCTGCCCCGCCGGTAACCCCCGCGCTTTTCTGTTTATGGCCCCTGATGAACAACTTCTGGCGGt > 2:144926/1‑149 (MQ=37) cAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGCTTTCTGTGTATGGCTCCTCATGCACCACTTCTGACgat > 2:507287/1‑147 (MQ=25) gTTTTGTAGACCAGATAAGGCGTTTACGCCGCATCCGGCACGAACAATATCTACGTTGTCAACAATCTGCACCACCAGAAACACCAGCGGTCTTCTGTTAATGGCTCCTAATTAACAACTCCTGGCGGCGCAACGTCAACATACTTCCt > 2:47100/1‑149 (MQ=19) atgCCGGATGCGGCGTAAACGCCTTATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTaa < 2:61566/146‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCAtt < 2:357864/149‑1 (MQ=255) aGGCGTTTACGCCGCATCTGGTATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGa < 1:28471/149‑1 (MQ=255) tttACGCTGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGc > 2:295237/1‑129 (MQ=255) tttACGCTGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGc < 1:295237/129‑1 (MQ=255) gccgcATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATcgc < 1:92663/149‑1 (MQ=255) | ATCACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATCGC > NC_000913_3_vch_tpiA/1068306‑1068588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |