New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3248814 =	35 (1.190)	4 (0.150)	4/266	3.5	12.0%	noncoding (3248814/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	3248839 =	26 (0.950)					noncoding (3248839/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAATTACATTTGACTCCAGCGACCAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCGGTGGTTAACACTACCGCTTCGTTGTCTGGACAATCGTTCCTTTGTAATAGGTCCGAATCACAAT  >  NC_000913_3_vch_tpiA/3248667‑3248955                                                                                                                                                    |                                                                                                                                              ttAATTACATTTGACTCCAGCGACCAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCtt                                                                                                                                              >  1:67924/1‑149 (MQ=255)   aaTTACATTTGACTCCAGCGACCAGAGCGCCGCCGCAAAAGCGGTCCTCGCCAGAACCTTGCCCCATCACTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCg                                                                                                                                            >  2:416658/1‑149 (MQ=255)    aTTACATTTGACTCCAGCGACCAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGACCATTGCCCCATGGCGACATCATTGCGCAGCAGGATAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCgg                                                                                                                                           <  2:389173/149‑1 (MQ=255)     ttACATTTGACTCCAGCGACCAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGa                                                                                                                                          >  2:310065/1‑149 (MQ=255)             gACTCCAGCGACCAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTcc                                                                                                                                  <  1:310065/149‑1 (MQ=255)                  cAGCGACCAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTa                                                                                                                             >  1:401239/1‑149 (MQ=255)                       aCCAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTg                                                                                                                                >  2:395860/1‑141 (MQ=255)                       aCCAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTg                                                                                                                                <  1:395860/141‑1 (MQ=255)                        ccAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGaa                                                                                                                       >  1:496144/1‑149 (MQ=255)                         cAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTAACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGaaa                                                                                                                      <  1:339751/149‑1 (MQ=255)                                ccgccgcAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATAtca                                                                                                               <  1:75010/149‑1 (MQ=255)                                   ccgcAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGAACAATAACAATCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAAAAGAtcactc                                                                                                            >  1:114536/1‑149 (MQ=255)                                    cgcAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATCtcactcc                                                                                                           >  2:210011/1‑148 (MQ=255)                                         aaGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACACTCATAGCTTCGGATAACTTCCTGTTGTCCGAAACATATCACTCACTTTg                                                                                                      >  2:99511/1‑149 (MQ=255)                                                   cGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCAc                                                                                            <  1:459763/149‑1 (MQ=255)                                                           cATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACtt                                                                                    >  1:413615/1‑148 (MQ=255)                                                               gCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTa                                                                                >  1:304342/1‑149 (MQ=255)                                                                        cTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATg                                                                       >  2:290289/1‑149 (MQ=255)                                                                           catcatTGGGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAgg                                                                    <  2:40148/149‑1 (MQ=255)                                                                           catcatTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAgg                                                                    <  2:470513/149‑1 (MQ=255)                                                                                ttGCGCAGCAGGACAAGAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCggtg                                                               <  1:416658/149‑1 (MQ=255)                                                                                 tGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCggtgg                                                              <  2:148658/149‑1 (MQ=255)                                                                                 tGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACCCTCATCGCTTTGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCggtgg                                                              <  1:49601/149‑1 (MQ=255)                                                                                 tGCGCAGCAGGACAACAACAGTCAGGCGATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCggtgg                                                              <  2:396654/149‑1 (MQ=255)                                                                                  gcgcAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCggtggt                                                             <  1:290289/149‑1 (MQ=255)                                                                                  gcgcAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGACggtggt                                                             >  1:320047/1‑149 (MQ=255)                                                                                       gcagGACCATAACAGTCAGGCTATGCAGTGGCTTACCCGGTTACGGGATAACTCTCATCGCTTCTGATAACTTCCTGTTATCCGCAACATCTCACTCATTTTGGTGATTTCACCGTATCTTTCTATGATTAATGAGGCTGTGGTTAact                                                        <  2:432310/149‑2 (MQ=255)                                                                                                                 aGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCGGTGGTTAac                                                         <  2:137044/122‑1 (MQ=255)                                                                                                                 aGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCGGTGGTTAac                                                         >  1:137044/1‑122 (MQ=255)                                                                                                                   tGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCGGTGGTTAACACTACCGCTTCGTTGTCTGGACAATCGtt                            <  1:446972/149‑1 (MQ=255)                                                                                                                                caagtgATACCCCTCATCGCCTTGTATAACGTCCTGTTATCCGAAACATATCACTCACTTTGTGGATTTCACCGCAACTGTCTATTAATAAGCAGGCAGCAACTAACACTACCGCTTCCATCTCTGGACAATCCCTCCTTTGTACTAgg               <  2:285647/144‑1 (MQ=255)                                                                                                                                  cGGGATAACTCTCCTCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCGGTGGTTAACACTACCGCTTCGTTGTCTGGACAATCGTTCCTTTGTAATAGGTc             <  1:187633/149‑1 (MQ=255)                                                                                                                                   gggATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCGGTGGTTAACACTACCGCTTCGTTGTCTGGACAATCGTTCCTTTGTAATAGGTcc            >  2:33791/1‑149 (MQ=255)                                                                                                                                          ctctCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCGGTGGTTAACACTACCGCTTCGTTGTCTGGACAATCGTTCCTTTGTAATAGGTCCGAATcac     >  2:21855/1‑149 (MQ=255)                                                                                                                                             tcATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCGGTGGTTAACACTACCGCTTCGTTGTCTGGACAATCGTTCCTTTGTAATAGGTCCGAATCACAAt  <  1:367069/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                              TTAATTACATTTGACTCCAGCGACCAGAGCGCCGCCGCAAAAGCGGTCCTCGACAGAACATTGCCCCATGGCTACATCATTGCGCAGCAGGACAATAACAGTCAGGCTATGCAGTGGCTGACCCGGTTACGGGATAACTCTCATCGCTTCGGATAACTTCCTGTTATCCGAAACATATCACTCACTTTGGTGATTTCACCGTAACTGTCTATGATTAATGAGGCGGTGGTTAACACTACCGCTTCGTTGTCTGGACAATCGTTCCTTTGTAATAGGTCCGAATCACAAT  >  NC_000913_3_vch_tpiA/3248667‑3248955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.