New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1068445 =	26 (0.890)	4 (0.140)	4/272	3.6	10.8%	noncoding (92/98 nt)	RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_vch_tpiA	3598473 =	41 (1.470)					noncoding (77/99 nt)	RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCA  >  NC_000913_3_vch_tpiA/3598331‑3598619                                                                                                                                               |                                                                                                                                                   gTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGt                                                                                                                                              <  1:48653/149‑1 (MQ=255)    tACGGCACAACCGGGCGGTTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATTAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTa                                                                                                                                           <  1:195903/149‑1 (MQ=255)    gaCGGCACAACGGGGCGGCTGGGAGAAGTGGTAATCAGCGAGTTTGATTTCAAAAGTTATATTGCCTGATTCGCTTCGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGACTTCTTTGGAGCTTGTAGGCCGGATAAGGCGTTTa                                                                                                                                           <  1:398385/148‑1 (MQ=38)       ggCGCAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTTATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcgc                                                                                                                                        <  2:352212/149‑1 (MQ=255)        gaagacgaGGGCGGTTGGGAGAAGTGTGAATCGTCAAGTTTGATTTCAAAAGTGATATTGCGTGATGCGCTACGCCTATCAGGCCTACAATGTGTGTTGCGATTTACTGATTTGTTTGGATCTTGTAGGGCGGATAAGGCGTTTAcgcc                                                                                                                                       <  2:80012/142‑1 (MQ=38)                 ggcggcTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAgg                                                                                                                                                 <  2:126936/130‑1 (MQ=255)                 ggcggcTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAgg                                                                                                                                                 >  1:126936/1‑130 (MQ=255)                 ggcggcGGGGAGAAGTTGTGATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                                                                              <  1:368043/149‑1 (MQ=255)                      cTGGGATAAGTTTGAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGaa                                                                                                                         <  2:491513/149‑1 (MQ=255)                             aaGTGTTAATCGGCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGt                                                                                                                  <  2:118516/149‑1 (MQ=255)                                  ttAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCg                                                                                                             >  1:305853/1‑149 (MQ=255)                                  ttAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTCGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCg                                                                                                             >  2:377952/1‑149 (MQ=255)                                    aaTCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGat                                                                                                           >  2:75813/1‑149 (MQ=255)                                     aTCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGata                                                                                                          <  1:75813/149‑1 (MQ=255)                                        gTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTa                                                                                                       <  2:444894/149‑1 (MQ=255)                                         tCAAGTTTTATTTTATAATTGATGGTGCCTTGTGTGCTCCGCTGATCATGCGTACAATTTGTGTTGCAATTTACTGAGTCCTTGGGATCTTTTAGGCCGGTTTAGGTGTTTACGCCGCATCCGGCATGAAGCAACGTACTTGATATTAg                                                                                                      <  2:78787/149‑1 (MQ=255)                                                   tttCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTggcg                                                                                            >  2:334205/1‑149 (MQ=255)                                                       aaaaGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATGTTCGCAAGTTGGCGGCaa                                                                                        >  1:139106/1‑149 (MQ=255)                                                       aaaaGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCaa                                                                                        >  2:513213/1‑149 (MQ=255)                                                            tGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTa                                                                                                       <  1:131231/129‑1 (MQ=255)                                                            tGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTa                                                                                                       >  2:131231/1‑129 (MQ=255)                                                                          gcgcTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACCACAAATGAGGATTGTGGCGTCAAGCCAAAGTTGCAGaataat                                                                     >  1:95075/1‑149 (MQ=25)                                                                          gcgcTACGCTTATAAGGCCTACAATGTGTGTTGCGATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAAt                                                                     <  1:97243/149‑1 (MQ=255)                                                                            gcTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGa                                                                   >  1:216877/1‑149 (MQ=255)                                                                             cTACGCTTATCAGGCCTACATTGTGCGTTGCAATTTACCGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATATGGCCTGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGAt                                                                  <  1:45097/149‑1 (MQ=39)                                                                                 gCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACt                                                              >  1:217408/1‑149 (MQ=255)                                                                                   ttATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTc                                                            >  2:92134/1‑149 (MQ=255)                                                                                                   gtgttgtGCAAGTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTCCTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCgccgtgc                                            <  2:288059/143‑1 (MQ=255)                                                                                                        ttGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCaaa                                                                                  <  1:76247/106‑1 (MQ=255)                                                                                                        ttGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCaaa                                                                                  >  2:76247/1‑106 (MQ=255)                                                                                                        ttGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGATCGCCTTGCCGTTg                                       >  1:139421/1‑149 (MQ=255)                                                                                                         tGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCGGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTgg                                      >  1:367296/1‑149 (MQ=255)                                                                                                          gCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGc                                     <  1:181312/149‑1 (MQ=255)                                                                                                            aaTTTACTGATTTCTTCGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGAATAGAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGt                                   <  1:377952/149‑1 (MQ=255)                                                                                                             atgtACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTg                                  <  1:299933/146‑1 (MQ=255)                                                                                                              tttCCTTATTTCTTGGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGATGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGc                                 <  1:120518/149‑1 (MQ=255)                                                                                                              tttACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATAGGTAACCTTGCCGTTGGCGTGc                                 >  2:338820/1‑149 (MQ=255)                                                                                                                           tgggATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGc                    <  1:3005/147‑1 (MQ=255)                                                                                                                            tGGATCTTGTAGGCCGGATAAGTCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGcc                   <  1:46386/149‑1 (MQ=255)                                                                                                                                    gTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCCAGACGCAACGTTTTCGATATTAGCAAATTGAAGGCGTTCCAAGTTTGCCCGGTTTCGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCaa           <  1:121945/149‑1 (MQ=255)                                                                                                                                     tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGGAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCaaa          <  1:287400/149‑1 (MQ=255)                                                                                                                                             aTAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCa  <  2:379107/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   GTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAATGATTACTTCGCATCGGTCGCCGTGCCGTTGGCGTGCCAGTCAAATACGCCGAACTCAAAGCCTTTCA  >  NC_000913_3_vch_tpiA/3598331‑3598619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.