New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	4108571 =	NA (NA)	4 (0.140)	4/272	3.6	NA	noncoding (1/98 nt)	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_vch_tpiA	4108596 =	NA (NA)					noncoding (26/98 nt)	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

GAAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAACATA  >  NC_000913_3_vch_tpiA/4108455‑4108735                                                                                                                                              |                                                                                                                                            gAAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGa                                                                                                                                      >  1:41365/1‑149 (MQ=255)       aTGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTg                                                                                                                                >  1:451752/1‑149 (MQ=255)        tGATGCGTTCTTTTAAAGGTGACTCGCTCGACTGCGCGTAAACACTGTATCAATGATTTTGGAAAAAGGCAGATCTCTTGACCTTGAAATCGATGACAGAAGCAACCATGCCTGATGCGCTTCGCTTATCAGGTCTACATCTATTCTgt                                                                                                                               <  2:314152/149‑2 (MQ=255)                  gTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTACTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTCCCCTTATCGAGCCTACATGAATTCTGCACTCTATTgc                                                                                                                     >  2:502789/1‑148 (MQ=255)                      aaaGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCGTGAAACCGGTGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAAGTTATGGAGttt                                                                                                                 >  1:56542/1‑149 (MQ=39)                        aGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAAGTTATTGAATTTGc                                                                                                               >  1:97379/1‑149 (MQ=255)                                  ctggACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGt                                                                                                     <  2:457542/149‑1 (MQ=255)                                             gAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTCCAGGCGATTACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATaa                                                                                          >  1:358333/1‑149 (MQ=37)                                              aaaaaaCTGTATTAATCATTTCGGACAAAGTCATATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAg                                                                                         <  1:212369/149‑1 (MQ=255)                                                   aCTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGtt                                                                                    <  2:41365/149‑1 (MQ=255)                                                         ctAAGGATTTTAGAAAAAGGGACAGTCCTTTACCCTGAAACCGATGACACAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGcgcc                                                                              <  1:422806/148‑1 (MQ=25)                                                          tAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGcgccg                                                                             >  1:50645/1‑149 (MQ=255)                                                           aaTGCTTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAGTTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCTGATAAGGCGTTCGcgccgc                                                                            >  1:487807/1‑149 (MQ=255)                                                                          aGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACaa                                                             >  1:130796/1‑149 (MQ=255)                                                                            gCAGATTCCTTTACCCTGAAACCGATGACATAACCAAAAATGCCAGCAACACCGTACTAATCAGGCCTACATGAACTCCGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAg                                                           <  1:144997/149‑1 (MQ=18)                                                                             cAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAgc                                                          <  1:440858/149‑1 (MQ=255)                                                                             cAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAgc                                                          <  2:130796/149‑1 (MQ=255)                                                                                         cccTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACGTGAATTATGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTAAg                                              >  2:69655/1‑149 (MQ=255)                                                                                              aaaCCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAata                                         <  1:296745/149‑1 (MQ=255)                                                                                                      gACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCgg                                 >  1:336264/1‑149 (MQ=255)                                                                                                       aCAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGACTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGa                                >  2:451036/1‑149 (MQ=255)                                                                                                          gAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGGAATGTCGTTCGCTCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGAttt                             >  1:504096/1‑149 (MQ=25)                                                                                                               aaaaaTGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTcc                        >  2:199555/1‑149 (MQ=255)                                                                                                                   aTGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGAAAACTGTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCt                    >  1:146619/1‑149 (MQ=255)                                                                                                                         gATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTaa              >  2:268542/1‑149 (MQ=255)                                                                                                                         gATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTaa              >  2:8109/1‑149 (MQ=255)                                                                                                                         gATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTCCTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGCCATGGACAAATCCCACTTTGTCAGCAATATGCGGCGGATTTCTTCCGCCTTTTTaa              <  1:135295/149‑1 (MQ=25)                                                                                                                                ttcgcttATCAGGCCTACATGAATTATGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAGAGCGAACTTTGTCAGCAATATGAGGCTGATTTCTTCCGCCTTTTTAATTCCTCa       >  1:200290/1‑149 (MQ=25)                                                                                                                                    cttATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTCGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAACa    >  1:122901/1‑148 (MQ=255)                                                                                                                                    cttATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAACa    <  2:122901/148‑1 (MQ=255)                                                                                                                                    cttATCAGGCCTACATGAATTCTGCAATCTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAACat   >  1:502917/1‑149 (MQ=255)                                                                                                                                     ttATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTATTTCCTCAACata  >  2:438606/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                            GAAAACATGAAGCGTCCGTTCAAAGGTGACTGGCTGGACTGCGCGAAAAAACTGTATTAATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAACATA  >  NC_000913_3_vch_tpiA/4108455‑4108735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.