New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4171833	34 (1.160)	7 (0.240)	5/282	3.3	16.0%	noncoding (4171833/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4213192	40 (1.380)					noncoding (4213192/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGG  >  NC_000913_3_vch_tpiA/4213048‑4213340                                                                                                                                                 |                                                                                                                                                     aGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTa                                                                                                                                                  <  1:118436/149‑1 (MQ=31)        tGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAc                                                                                                                                           <  2:377994/149‑1 (MQ=37)         gATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAcc                                                                                                                                          >  1:388935/1‑149 (MQ=38)         gATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGACGGACTGAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAcc                                                                                                                                          >  1:276116/1‑149 (MQ=255)             aaaCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCgg                                                                                                                                      >  2:111141/1‑149 (MQ=40)              aaCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGt                                                                                                                                     <  1:111141/149‑1 (MQ=255)                cAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTcc                                                                                                                                   >  1:36304/1‑149 (MQ=255)                           tGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCggg                                                                                                                        >  2:131222/1‑149 (MQ=255)                            ggcggcAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAACCCGGTCCAGGAGGCCgagg                                                                                                                       >  2:358113/1‑149 (MQ=255)                                    tAGCGCGGTGGTCCCACCTGACCCCATGACGAACTCAGAAGTGAAACGCCGTAGCGACGATGGTAGTGTGGGGACTCCCCATGCGAGAGTAGAACACTGCCAGGCATCAAATTAGAAAAAACCCGGTACATAAGGCAGGAGTTTTTTgt                                                                                                               >  2:11334/1‑148 (MQ=14)                                     agggcgGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCa                                                                                                              <  2:347139/146‑1 (MQ=255)                                     aGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGTAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCa                                                                                                              <  2:406551/149‑1 (MQ=255)                                        gcgGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCatat                                                                                                           <  2:352934/149‑1 (MQ=255)                                          ggtggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCa                                                                                                         <  1:475812/149‑1 (MQ=255)                                                   aCCTGACCCCATGCCGAACTCAGAAGTGAACCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGc                                                                                                <  2:335131/149‑1 (MQ=255)                                                         tcgcATGCCAGACTCAGAAGTGAATCGCCGTAGCGGCGATGGTAGTGTGGGGTCTCCCTATGCGAGAGGAGCGAACTGCCACGCATCAGTTTAGAAAAACCCCGGTCCATACGGCCGGGGTTTTTTGCATATCAATTATTTGCatgatg                                                                                          <  2:5976/146‑1 (MQ=21)                                                           ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGaa                                                                                        <  1:131222/149‑1 (MQ=255)                                                           ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGAAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGaa                                                                                        >  2:237218/1‑149 (MQ=255)                                                           ccATGCCGAACTCAGAAGTGAAAAGCCGTGACGCCTAGGGTAGTGTGGGGTCGCGCCTTGCGAGAGTAGGGAACTGCCAGGCAGCAAATTAGAAAAACCACGGTCCATAAGGCCGGGGGTTTTTGCATATCAATTATTTGCATGATGaa                                                                                        >  2:305300/1‑149 (MQ=21)                                                                ccGAACTCAGAAGTGAAACGCCGTAGAGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGaa                                                                                   <  2:477932/149‑1 (MQ=255)                                                                   aaCGCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTGCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAAtct                                                                                <  1:79872/149‑1 (MQ=255)                                                                      tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCAt                                                                             >  1:29120/1‑149 (MQ=255)                                                                        aGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGAGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGt                                                                           >  2:407452/1‑149 (MQ=255)                                                                                                tGGGAGTGTGGGGTCACCCCATGCGAGGGTAGGGACCTGCGAGGCATCGATTTAGAAAAACCCCGGTACGTAAGGCCAGGGTTTTTTGCAAATCTATTAGTTGCAGGATGAAGTTAATCTCATGTCAGTTCTGTATATCCAAATtcgtc                                                   <  2:102438/149‑1 (MQ=255)                                                                                                         ggggTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAACACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCaaa                                          <  1:52358/149‑1 (MQ=255)                                                                                                             tctcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCCTGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTAc                                      <  1:358113/149‑1 (MQ=255)                                                                                                               tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCaa                                                                                                        >  2:261619/1‑81 (MQ=255)                                                                                                               tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCaa                                                                                                        <  1:261619/81‑1 (MQ=255)                                                                                                                   cATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTGTTTTGCATATCAATTAGTTGCATGATGAAGGGAATCGCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGGTca                                >  1:236808/1‑148 (MQ=255)                                                                                                                      gCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGa                             <  2:180048/149‑1 (MQ=255)                                                                                                                         agagTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATGTCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAGTTACTTTTCGAGATCt                          >  1:54015/1‑149 (MQ=255)                                                                                                                            gTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGa                       <  1:371535/149‑1 (MQ=255)                                                                                                                                    cTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCtt                         >  2:166069/1‑139 (MQ=255)                                                                                                                                    cTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCtt                         <  1:166069/139‑1 (MQ=255)                                                                                                                                        cAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGa           <  1:258887/149‑1 (MQ=255)                                                                                                                                          tggcaggaaTTAGAAAAGCCGCGGTCGATAAGTCCCTGTTTTTTTGCCTAGCAATTATTTGCATGATGAAGGTAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAg         <  2:404159/142‑1 (MQ=255)                                                                                                                                            cATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAgtg       >  1:23003/1‑149 (MQ=255)                                                                                                                                              tCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTc     >  1:483918/1‑149 (MQ=255)                                                                                                                                                aaaTTAGAAAAACCCCGGTCCATAAAGCCGGGGTTTTTTACATATCAATTATTTGCATGATGAAGGTAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAg   <  1:469028/149‑1 (MQ=255)                                                                                                                                                 aaTTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCTCTATCTTGAAAGCAAACGTGAAGTGTCAgg  >  1:222704/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     AGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGG  >  NC_000913_3_vch_tpiA/4213048‑4213340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.