New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4628844	NA (NA)	4 (0.140)	4/272	3.6	NA	noncoding (120/150 nt)	RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	NC_000913_3_vch_tpiA	= 4628874	NA (NA)					noncoding (150/150 nt)	RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

ACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATC  >  NC_000913_3_vch_tpiA/4628729‑4629016                                                                                                                                                  |                                                                                                                                               aCCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCATCTTATCCGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGGTAAGGCGTTCGCGGCGCATCCGGCAtt                                                                                                                                             >  1:212452/1‑149 (MQ=255)  ccGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAttt                                                                                                                                            >  2:291305/1‑149 (MQ=255)   cGGAAACGGTGTTCACGCCGCATCCGACATTCGGTGCTCAATGACTGATGCGACGCTTACGGCGTCTTATGAGACCTACAGTTTTACAACGTATTGAAATTGCAGGTTGTGTGGGCCGGGTAATGTGTCCGCGCCCCATCGGGCactag                                                                                                                                           >  2:182411/1‑145 (MQ=255)    ggAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                                                                                                                                          >  1:371356/1‑149 (MQ=255)     gAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTAc                                                                                                                                         <  2:429992/149‑1 (MQ=255)        aCGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCa                                                                                                                                      >  1:191733/1‑149 (MQ=255)              ttCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACtt                                                                                                                                >  2:185956/1‑149 (MQ=255)               tCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGTCGCATCCGGCATTTTACGCATTACTTc                                                                                                                               <  2:497197/149‑1 (MQ=255)                    ccgcATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAAt                                                                                                                          <  1:363474/149‑1 (MQ=255)                       cATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACg                                                                                                                       <  2:22167/149‑1 (MQ=255)                        aTCGGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGc                                                                                                                      <  2:477559/149‑1 (MQ=255)                        aTCCGGCATGCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCTTATAAGGCTTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGc                                                                                                                      <  1:210024/149‑1 (MQ=255)                          ccGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCtt                                                                                                                    <  1:297279/149‑1 (MQ=255)                                ttCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACtt                                                                                                              >  1:318496/1‑149 (MQ=255)                                   ggTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACCCTTGTACTTTAt                                                                                                           >  1:47986/1‑149 (MQ=255)                                                tGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGCCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTcc                                                                                              >  1:391531/1‑149 (MQ=255)                                                     cGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGGTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCTGCTCCAgcgc                                                                                         >  1:404251/1‑149 (MQ=255)                                                                         cAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGtt                                                                     <  1:63611/149‑1 (MQ=255)                                                                          aGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATGAGTCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGttt                                                                    >  1:277660/1‑149 (MQ=255)                                                                             ccTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                                                                 <  1:185956/149‑1 (MQ=255)                                                                                aCAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTa                                                              <  1:373782/149‑1 (MQ=255)                                                                                          aaCGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATGCGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTAc                                                    >  2:389274/1‑149 (MQ=255)                                                                                                     aTTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGtt                                         <  1:297035/149‑1 (MQ=255)                                                                                                          tGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACCCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCtt                                    >  2:350015/1‑149 (MQ=255)                                                                                                            gTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATa                                                                                                          >  1:183696/1‑77 (MQ=255)                                                                                                            gTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATa                                                                                                          <  2:183696/77‑1 (MQ=255)                                                                                                            gTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCg                                  >  1:288301/1‑149 (MQ=255)                                                                                                                tGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTcgacga                              >  1:39323/1‑149 (MQ=255)                                                                                                                  tAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAAc                            <  2:318496/149‑1 (MQ=255)                                                                                                                     gCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCa                         >  2:17060/1‑149 (MQ=255)                                                                                                                       cGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGTAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCAAc                       <  2:296675/149‑1 (MQ=255)                                                                                                                             aGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATGCGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTAcc                 <  2:288301/149‑1 (MQ=255)                                                                                                                                   tCGCGCCGCATCCGGGATTTTACGCATTCCTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATc           <  2:438153/149‑1 (MQ=255)                                                                                                                                     gcgcCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGGCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGATAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCt         >  2:405677/1‑149 (MQ=255)                                                                                                                                            aTCCGGCAGTTTACGCAGTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCACCTTTACCTTCATCCTGGTAATc  <  2:47986/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               ACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCGAAGAACTCAACTTTACCTTCATCCTGGTAATC  >  NC_000913_3_vch_tpiA/4628729‑4629016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.