Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_vch_tpiA 3,815,837 Δ124 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_vch_tpiA 3815837 3815960 124 32 [0] [0] 32 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_tpiA = 38158360 (0.000)31 (1.060) 28/284 0.2 100% noncoding (3815836/4641682 nt) repeat_region repeat region
?NC_000913_3_vch_tpiA 3815961 = 0 (0.000)noncoding (3815961/4641682 nt) repeat_region repeat region

CTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCC  >  NC_000913_3_vch_tpiA/3815814‑3816108
                                                                                                                                                   |                                                                                                                                                    
atttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatccttttgctcgtcgtcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTg                                                                                                                                                     <  1:482923‑M2/2‑1 (MQ=255)
                  caaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGatcatc                                                                                                                                   >  2:286894‑M2/130‑149 (MQ=255)
                         taacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGt                                                                                                                            <  1:94137‑M2/27‑1 (MQ=255)
                               ctgcttgctaagtggaacttcaatcaaacggcggtgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcctccgtcggcttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGt                                                                                                                      <  2:85806‑M2/33‑1 (MQ=255)
                                  cttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttatacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg                                                                                                                   >  1:76096‑M2/114‑149 (MQ=255)
                                   cttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaacaggagtctaaacatcctccttaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                                                                                                  >  1:119465‑M2/113‑149 (MQ=255)
                                          gcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatattacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCAATACGTTCATGTCGGTGTctgag                                                                                                          >  1:129374‑M2/106‑147 (MQ=255)
                                           cgcaacttcaataaactggcgctgatatggtttcctgccttcgctcctcattttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaattcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCgg                                                                                                         <  1:175586‑M2/45‑1 (MQ=255)
                                            gcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatctcacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                                                                                        >  1:217607‑M2/104‑149 (MQ=255)
                                             caaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCa                                                                                                       <  1:17718‑M2/47‑1 (MQ=255)
                                                    aataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                                                <  2:161265‑M2/54‑1 (MQ=255)
                                                     ataaactggcgctgatatggtttcatgccttcgctcctcatcttccttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCCCCCGTCTTCCTCCATCACTACCCTCCTGTCGGTCCCTGCGACAGACTCTTc                                                                                               >  2:147726‑M2/95‑149 (MQ=255)
                                                        aactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                                            >  2:195797‑M2/92‑149 (MQ=255)
                                                                                 cttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCg                                                                   >  1:369951‑M2/67‑149 (MQ=255)
                                                                                      ctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCGTCACCGtt                                                              >  1:166845‑M2/62‑149 (MQ=255)
                                                                                        cttcatattatttttctagagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCCGTCATTACTACGTTCATGTCTGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAGCGCAAACCGCTTCGCCGTTca                                                            <  2:12169‑M2/90‑1 (MQ=255)
                                                                                         ctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTAAAATACGCTGGTGGTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTcac                                                           >  1:504136‑M2/59‑149 (MQ=255)
                                                                                             tcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAAtt                                                       >  1:465940‑M2/55‑149 (MQ=255)
                                                                                                 acttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCCCCGTTCACAATTCCGa                                                   >  2:285993‑M2/51‑149 (MQ=255)
                                                                                                  cttttccacacacaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc                                                  <  1:132360‑M2/100‑1 (MQ=255)
                                                                                                     ttatacagacaaaaaaaaggcgactcatcagtcgttgtaaaaatcaTGCGCCCGTCTTCGTTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGa                                               >  2:508407‑M2/47‑149 (MQ=255)
                                                                                                             acaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCCAATTCCGACAGAAACTGCgg                                       >  1:173905‑M2/39‑149 (MQ=255)
                                                                                                             acaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                                            <  1:410915‑M2/58‑1 (MQ=255)
                                                                                                             acaaaaaaaaggcgactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                                                            >  2:410915‑M2/39‑96 (MQ=255)
                                                                                                                          gactcatcagtcgccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGACGTTCCCAATTCCGACAGAAACTGCGGCTACCATCCCatt                          >  1:33410‑M2/26‑149 (MQ=255)
                                                                                                                              cacccgtctccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCCTTTCTCTAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCTTCCCTTTCATc                      <  2:236765‑M2/128‑1 (MQ=255)
                                                                                                                                    tcggtttaaaaatcaTGCGCCCGTCTTCGGTCATCACTTCGTTTATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGGCAGAAACTGCGGCTACCATCCCTTTCATCGGATTg                <  2:476712‑M2/134‑1 (MQ=255)
                                                                                                                                       ccttaaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGtt             >  1:279913‑M2/13‑149 (MQ=255)
                                                                                                                                         ttaaaaatcaTACGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGGCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCATTCATCGGATTGGtttt           >  2:357145‑M2/11‑149 (MQ=255)
                                                                                                                                          taaaaatcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTc          <  2:59958‑M2/140‑1 (MQ=255)
                                                                                                                                               atcaTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCtt     <  2:217607‑M2/145‑1 (MQ=255)
                                                                                                                                                  aTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGcc  >  1:287735‑M2/2‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
CTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCC  >  NC_000913_3_vch_tpiA/3815814‑3816108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: