New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	4090599 =	26 (0.800)	5 (0.160)	5/274	3.7	14.1%	noncoding (4090599/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	4090628 =	36 (1.150)					noncoding (4090628/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGCCGCGCTTTTCCACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTGGACCTT  >  NC_000913_3_vch_tpiA/4090480‑4090771                                                                                                                                                     |                                                                                                                                                aCGCCGCGCTTTTCCACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGCCGGAACCAATCACACCAGGGATTTTCACTCCCTtgtgtgt                                                                                                                                                 >  1:168630/1‑149 (MQ=255)       cgcTTTTCCACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTAt                                                                                                                                           <  2:137800/149‑1 (MQ=255)              ccACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTAcc                                                                                                                                    <  1:35758/149‑1 (MQ=255)                      gcccgACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTGTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGtt                                                                                                                            <  2:169527/146‑1 (MQ=255)                        gctaCTGTTCGCGCCAATATCAATGAACATCTCTTCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGa                                                                                                                          <  2:513230/146‑1 (MQ=255)                          gACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGc                                                                                                                                               <  2:361497/126‑1 (MQ=255)                          gACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGc                                                                                                                                               >  1:361497/1‑126 (MQ=255)                             tGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGCGTGCGTAGGGTTACCCGGTGGTTGAGCATc                                                                                                                     >  2:9141/1‑149 (MQ=255)                                                 aaCATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACCCCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCGgccgcc                                                                                                 >  2:164797/1‑149 (MQ=255)                                                   cATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCaa                                                                                               <  2:460570/149‑1 (MQ=255)                                                        catcaAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAAtgggg                                                                                          >  1:319736/1‑147 (MQ=255)                                                         atcaAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGCATGGTTACACGGTGGTTGATCAGCGCCTGCTTCCCCCCCCCGCCCAttgtag                                                                                         >  2:127572/1‑147 (MQ=255)                                                             aaTGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGGGGTaaa                                                                                     >  1:13467/1‑149 (MQ=255)                                                                  cAGCGGTTGTTGCTTTTGCTTGTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCa                                                                                <  2:518252/149‑1 (MQ=255)                                                                            tgcttttgctttTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGa                                                                                                                          <  1:409643/97‑1 (MQ=255)                                                                            tgcttttgctttTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGa                                                                                                                          >  2:409643/1‑97 (MQ=255)                                                                              cttttgtttttCCGTTAACGCATGAGGCGCGGCGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGctct                                                                    <  2:335980/149‑1 (MQ=255)                                                                                    cttttGCGTTAACGCATTGGGCGCGACGGAACCAATCACACCAGGGATTTTCTCTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGa                                                              <  2:174484/149‑1 (MQ=255)                                                                                         ccGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTgg                                                         <  1:80555/149‑1 (MQ=255)                                                                                         ccGGTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTgg                                                         <  1:485875/149‑1 (MQ=255)                                                                                                       ggCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGGGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGcc                                           >  1:88311/1‑149 (MQ=255)                                                                                                        gcgcGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCCTCGACTGATTCCACCAGCCGCCGATGGTGGTAAAACGCAGAAAACCGCTCACGTTGATGTGGGTGACCATAACGCCg                                          >  2:172328/1‑149 (MQ=255)                                                                                                                      aTCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATg                            >  1:471007/1‑149 (MQ=255)                                                                                                                       tCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGt                           >  1:355966/1‑149 (MQ=255)                                                                                                                             cAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACa                     >  1:348455/1‑149 (MQ=255)                                                                                                                                     ttCGCTCCCTTGTGTTGGCGTAGGTTTACCCGGTGTCTGAGCATCGACTGATTCCACCTGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAAc             <  2:240016/149‑1 (MQ=255)                                                                                                                                        acccccTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACttt          <  1:242548/146‑1 (MQ=255)                                                                                                                                         cTCCCTTGTGTGTGCGTATGGTTACCGGGTGGTTGAGCATCGACTGATTCCCCCAGCTGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACtttt         <  1:9141/149‑1 (MQ=255)                                                                                                                                          tCCCTTGTGTGTGCTTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTg        <  2:332956/149‑1 (MQ=255)                                                                                                                                          tCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCCTCCATATGTCCGACAACGGCAACTTTTg        >  2:472722/1‑149 (MQ=255)                                                                                                                                          tCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTg        >  2:561549/1‑149 (MQ=255)                                                                                                                                          tCCCTTGTGTGTGCGTATGCTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTg        <  1:309506/149‑1 (MQ=255)                                                                                                                                          tCCCTTGTGTGGGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCTAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTg        <  2:523592/149‑1 (MQ=255)                                                                                                                                          tCCCTGTTGTGTGCGTATGGTTAGCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTg        <  2:88311/149‑1 (MQ=255)                                                                                                                                            ccTTTTGTGTGGTTATGGTTACCTGGTGGTTGAGCATCGACGGATT‑TACCAGTCGCCAATGGTGGTAAAACGCAGAAACCCCCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTGGAc     <  2:168627/149‑1 (MQ=255)                                                                                                                                             cTTTTGTGTGGGTATTGTTACCCGGTGGTTGAGAATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTGGAc     <  2:168630/149‑1 (MQ=255)                                                                                                                                             cTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTGGAc     >  1:184687/1‑149 (MQ=255)                                                                                                                                                gtgtgtgCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTGGACCtt  >  2:492724/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                ACGCCGCGCTTTTCCACCTCTTCGCGACTGTTCGCGCCAATATCAATGAACATCTCATCAAATGACAGCGGTTGTTGCTTTTGCTTTTCCGTTAACGCATGAGGCGCGACGGAACCAATCACACCAGGGATTTTCACTCCCTTGTGTGTGCGTATGGTTACCCGGTGGTTGAGCATCGACTGATTCCACCAGCCGCCAATGGTGGTAAAACGCAGAAAACCGCTCTCGTCGATGTGGGTGACCATAAAGCCGACTTCATCCATATGTCCGACAACGGCAACTTTTGGACCTT  >  NC_000913_3_vch_tpiA/4090480‑4090771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.