Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_vch_tpiA 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_vch_tpiA 257908–258675 258683 9–776 29 [0] [1] 32 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_tpiA = 2579070 (0.000)28 (0.910) 24/268 0.4 100% noncoding (257907/4641682 nt) repeat_region repeat region
?NC_000913_3_vch_tpiA 258684 = 0 (0.000)noncoding (258684/4641682 nt) repeat_region repeat region

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCT  >  NC_000913_3_vch_tpiA/257768‑258050
                                                                                                                                           |                                                                                                                                               
ttcaaaatttTCGAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaag                                                                                                                                        >  2:292542‑M1/4‑140 (MQ=255)
           cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc                                                                                                                             >  1:1609‑M1/1‑129 (MQ=255)
                ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                        <  2:125442‑M1/149‑26 (MQ=255)
                 tttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                       <  1:38408‑M1/149‑27 (MQ=255)
                    gctaatttGGTAAAACAGTGGCATGATGACAGGAGATAGCAATGACGTTATCGAGTGGACACCTGAAGAGCAGATTGATCAAAGATTTTTCGGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatgatcgattctttttcgat                                                                                                                    <  2:158983‑M1/146‑30 (MQ=255)
                         tttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                               >  1:282984‑M1/1‑115 (MQ=255)
                           tgtgaaaagagtTGCATGACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTATTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                             <  2:147049‑M1/145‑37 (MQ=255)
                                aaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGCGCAGATGGATCAAAAAATTTACCGCACTAGGCCCGTATATCGGTGAAGGTAagtgcaaagatgatcggttctttttcgattgtctggctgta                                                                                                        >  1:361744‑M1/1‑108 (MQ=255)
                                   cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc                                                                                                     <  1:292542‑M1/149‑45 (MQ=255)
                                        gCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAATAGCATATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa                                                                                                <  1:509532‑M1/149‑50 (MQ=255)
                                        gCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattatttttcgaatgtctggctgtatccgtcag                                                                                                >  2:542443‑M1/1‑100 (MQ=255)
                                         cATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                               <  2:518603‑M1/149‑51 (MQ=255)
                                                acaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac                                                                                        >  1:540692‑M1/1‑92 (MQ=255)
                                                 caGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                       <  1:544686‑M1/149‑59 (MQ=255)
                                                               gccgtTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc                                                                         <  1:542443‑M1/147‑73 (MQ=255)
                                                                 cgctaccGAGTGGACAAACGAATAGCGTATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                       <  1:528275‑M1/146‑75 (MQ=255)
                                                                 cGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                       <  1:413713‑M1/149‑75 (MQ=255)
                                                                    tACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgcgaa                                                                    >  1:438700‑M1/1‑72 (MQ=255)
                                                                       cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgggagtgcgtgaattc                                                                 >  1:58427‑M1/1‑69 (MQ=255)
                                                                       cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattc                                                                 >  1:58512‑M1/1‑69 (MQ=255)
                                                                         aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                               <  1:546741‑M1/149‑83 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcttttttttggctgtatgcgtcaacgttaaacctgcaccggaagtgcttgaattctggggctggtg                                                      >  2:376092‑M1/1‑58 (MQ=255)
                                                                                     aaGAGCAGATTGATCAAAAAATTTACCGGACTAGTTCCTTATAGGCGTGAATGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggccccggaagtgcgtgaattctggggctggtggat                                                   <  2:544235‑M1/149‑95 (MQ=255)
                                                                                               tGATCAAAAAATTTACCGTACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                         <  1:282220‑M1/149‑105 (MQ=255)
                                                                                               tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                         <  2:1609‑M1/149‑105 (MQ=255)
                                                                                                     aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcag                                   >  1:77703‑M1/1‑39 (MQ=255)
                                                                                                                gCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttt                        >  1:107810‑M1/1‑28 (MQ=255)
                                                                                                                         ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctcgctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacag               >  1:375634‑M1/1‑19 (MQ=255)
                                                                                                                                      aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacaggaagtgagtgaattctggggctggtggatggagctggaagcgcaggaatcacgttttacctacagttacaagtttcgt  >  2:366078‑M1/1‑6 (MQ=255)
                                                                                                                                           |                                                                                                                                               
TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCT  >  NC_000913_3_vch_tpiA/257768‑258050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: