New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4150443	23 (0.810)	4 (0.150)	4/266	3.4	15.5%	noncoding (4150443/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4150453	22 (0.830)					noncoding (4150453/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCGGTGCAG  >  NC_000913_3_vch_tpiA/4150300‑4150590                                                                                                                                                |                                                                                                                                                    aGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGAAAATTCCTTAAGGATATCTGAAGGTATATTAAAAATTTGAATAAAATGAAGACAGAAATATATTGAAAACGAGGGTGTTAGAAAGAAAGTATTTAAGAAAAACCGCGAGCaa                                                                                                                                                >  1:234135/1‑149 (MQ=255)           ttGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAgg                                                                                                                                      <  1:383023/149‑1 (MQ=255)                aaaaTATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGtttt                                                                                                                                 <  1:77852/149‑2 (MQ=255)                      tCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCagaag                                                                                                                           <  1:44255/149‑1 (MQ=255)                        gCCGAATGTAACGAACATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTTAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAagag                                                                                                                         <  2:8914/149‑1 (MQ=255)                          cGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGa                                                                                                                       >  2:339386/1‑149 (MQ=255)                                            cTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACg                                                                                                     >  2:5584/1‑149 (MQ=255)                                            cTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACg                                                                                                     >  2:5311/1‑149 (MQ=255)                                             ttAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAACCGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGc                                                                                                    >  1:421561/1‑149 (MQ=255)                                                                  ttCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACACTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCa                                                                               >  1:200567/1‑149 (MQ=255)                                                                                 aaaTGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAACAGCGTCGAGCAAAAGCACGCGGGTTTGCAGACGAGGAAGATTAGCCGGTATTACCCATACCTGCCGCAAGCCCGTCAAGAGTGACCATTAAc                                                                >  2:170833/1‑149 (MQ=255)                                                                                             aaaTATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTTTTCGAcg                                                    >  2:95257/1‑149 (MQ=255)                                                                                                tatatTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCTGGCATTTGTGACCATTAACGCTTGTTCGACGCGa                                                 <  2:236746/149‑1 (MQ=255)                                                                                                            gAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTcc                                     >  1:408372/1‑149 (MQ=255)                                                                                                            gAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTGTTTCGACGCGAGGCTCCGGTTcc                                     >  2:117288/1‑149 (MQ=255)                                                                                                               ggTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGa                                                 >  2:20028/1‑134 (MQ=255)                                                                                                               ggTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGa                                                 <  1:20028/134‑1 (MQ=255)                                                                                                                               tATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCGTGGCCTTCTTTTTCTGCCt                  <  2:421561/149‑1 (MQ=255)                                                                                                                                     aGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCCATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGCTTCCTGGCCTTCTTTTTCTCCCCCGCggg            >  2:8246/1‑149 (MQ=255)                                                                                                                                       aaaaCCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAg          >  2:287046/1‑149 (MQ=255)                                                                                                                                         aaCCCGCGCGCAATAGCACGATGGTTTGCAGAATAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTTGACGCGAGGACCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCg        <  2:112497/149‑1 (MQ=255)                                                                                                                                           cccTCGCGCAAAAGCACGCGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAAAGCTTGTTCGACGCCAGGATCCGGTTCCTGCCCTTCTTTTTATGCCTGGCGGGGGCgga      >  2:76145/1‑148 (MQ=255)                                                                                                                                              tCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCGGTgca   >  2:61080/1‑149 (MQ=255)                                                                                                                                               cgcgCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCGGTgcag  <  1:287046/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    AGAACCTGTCTTGAAAAAATATCGCCGAATGTAACGACAATTCCTTAAGGATATCTGAAGGTATATTCAGAATTTGAATAAAATGCAGACAGAAATATATTGAAAACGAGGGTGTTAGAACAGAAGTATTTCAGAAAACCCTCGCGCAAAAGCACGAGGGTTTGCAGAAGAGGAAGATTAGCCGGTATTACGCATACCTGCCGCAATCCCGGCAATAGTGACCATTAACGCTTGTTCGACGCGAGGATCCGGTTCCTGGCCTTCTTTTTCTGCCTGGCGGGAGCGGTGCAG  >  NC_000913_3_vch_tpiA/4150300‑4150590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.