Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_vch_tpiA	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_vch_tpiA	1978503	1979278	776	30 [0]	[0] 30	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 1978502	0 (0.000)	30 (1.120)	27/268	0.1	100%	noncoding (1978502/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1979279 =	0 (0.000)					noncoding (1979279/4641682 nt)	repeat_region	repeat region

TCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC  >  NC_000913_3_vch_tpiA/1978364‑1978641                                                                                                                                            |                                                                                                                                            tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCCTGAAGCAGATCAGACAACACACTA‑AGTTACTTAACATAAATGtataagtcaa                                                                                                                                   >  2:208062‑M1/1‑139 (MQ=255)       cacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCGCACAAAAACCTA‑AAGTACTTAACATAAATGtataagtcatactttt                                                                                                                             >  2:477860‑M1/1‑133 (MQ=255)       cacTTATCTAAGATTGTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATGACA‑AAGAGTGTCGTCTTATGTAACATAAATGtataagtcatactttt                                                                                                                             >  2:477862‑M1/1‑133 (MQ=255)              ttaAGATTTTTCTTACATCGACGTATCTGTACTCGTGCCTAAACGCACATACAACGGAGGGGGGATGCGCTTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                      <  1:477862‑M1/148‑24 (MQ=255)              cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACATCGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAGAAAACACTC‑AATTACTTAACATTATTGtataagtcatacttttgttttgg                                                                                                                      <  2:374211‑M1/149‑24 (MQ=255)               tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                     >  1:90248‑M1/1‑125 (MQ=255)                          cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtgtttcaat                                                                                                          >  1:96964‑M1/1‑114 (MQ=255)                          cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                          >  2:275425‑M1/1‑114 (MQ=255)                           tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                                                         >  1:479872‑M1/1‑113 (MQ=255)                            aaaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcattct                                                                                                        >  2:168456‑M1/1‑112 (MQ=255)                                       aCTGTACTCGTCACGACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatccgttaaaaagtt                                                                                             <  1:176748‑M1/149‑49 (MQ=255)                                              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatactt                                                                                                                               <  1:427305‑M1/108‑15 (MQ=255)                                              tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatactt                                                                                                                               >  2:427305‑M1/1‑94 (MQ=255)                                                 tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTACCATAAATGtttaagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                   <  1:16558‑M1/149‑59 (MQ=255)                                                              aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa                                                                      >  1:434886‑M1/1‑78 (MQ=255)                                                                   aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaggtttttcgctacgctagcaagcaaaaatgaa                                                                 >  1:236357‑M1/1‑73 (MQ=255)                                                                       aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgcgtgtatttcaatctgttaaaaagtttttcgctaacctatcaaacaaaaattaaaaag                                                             >  2:262195‑M1/1‑69 (MQ=255)                                                                              cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat                                                      >  1:424045‑M1/1‑62 (MQ=255)                                                                                      ttCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                              <  2:90248‑M1/149‑96 (MQ=255)                                                                                                cGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGtatcagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctaagctagcaagcaaaaatgaaacaggaataatcgaaataggatgttgggc                                    >  1:349777‑M1/1‑44 (MQ=255)                                                                                                          aTCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttgtgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                          <  1:275425‑M1/149‑116 (MQ=255)                                                                                                           tCACACAAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                         >  2:422813‑M1/1‑33 (MQ=255)                                                                                                               acaAAACACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                     <  1:6987‑M1/149‑121 (MQ=255)                                                                                                                 aaaaCACTC‑AATTACTTAACATAAATGtataggtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                          <  1:62000‑M1/78‑52 (MQ=255)                                                                                                                 aaaaCACTC‑AATTACTTAACATAAATGtataggtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                          >  2:62000‑M1/1‑27 (MQ=255)                                                                                                                 aaaaCACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca                   <  2:403105‑M1/149‑123 (MQ=255)                                                                                                                   aaCACTC‑AATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc                 >  1:277400‑M1/1‑25 (MQ=255)                                                                                                                           aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata          >  1:415374‑M1/1‑18 (MQ=255)                                                                                                                                 ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatc    >  1:256794‑M1/1‑12 (MQ=255)                                                                                                                                   aaCATAAATGtataagtcatactcttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctg  <  1:384726‑M1/149‑140 (MQ=255)                                                                                                                                            |                                                                                                                                            TCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTC‑AATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC  >  NC_000913_3_vch_tpiA/1978364‑1978641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑