| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 2920036 = | 21 (0.840) | 4 (0.170) | 4/272 | 2.9 | 16.3% | noncoding (2920036/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2920054 = | 21 (0.890) | noncoding (2920054/4641682 nt) | repeat_region | repeat region | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGACGGGCAAGCCGGTCGCCCGTCGAAATTCCGCCATCACTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCC > NC_000913_3_vch_tpiA/2919890‑2920174 | acagcgaagtcgttgtgcgtctggcggaagcctcacaggatagctacggctttaaagatttcaaacttaagggcggcgtgttacctggcgagcaagaaatcgacactgttcgtgcattgaagaaacgcttcccggatgcgcggattAcc > 1:252213‑M1/147‑149 (MQ=255) gaagccgttgtgcgtctggcggaagcctcacaggatcgctacggctttaaagatttcaaacttaagggcggcgtgttacctggcgagcaagaaatcgacactgttcgtgcattgaagaaacgcttcccggatgcgcgcattACCGTtgc < 2:208644‑M1/8‑2 (MQ=255) gCCGGTCGCCCGTCGAAATTCCGCCATCACTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCaa < 1:402428/149‑1 (MQ=255) aaaTTCCGCCATCACTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCAt > 1:326614/1‑149 (MQ=255) cGCCATCACTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCTGCATAGGTAAGAACATTATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGa < 1:12163/149‑1 (MQ=255) cTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTCAGAACATCCTTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTttc < 1:202629/149‑1 (MQ=255) cGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCaa < 2:326614/149‑1 (MQ=255) tCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATg > 2:411995/1‑149 (MQ=255) ggAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCAc > 1:389107/1‑149 (MQ=255) ggAGAAGCCCTGTTCTGCGCAGCATGGATCTTCGGCATGGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATAAAGCAGCCATGCACCGATGTGCTTAACGTTAATCTGCGCATCCGGACAGCGTTTCTTCAATacac > 2:393054/1‑149 (MQ=255) cccTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAgt > 2:283525/1‑149 (MQ=255) cTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAgtgt < 2:393955/149‑1 (MQ=255) tGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTc > 1:302947/1‑149 (MQ=255) aacttaagggcggcgtgttacctggcgagcaagaaatcgacactgttcgtgcattgaagaaacgcttcccggatgcgcggattACCGTTGGGATCAACGGTAATc < 1:184039‑M1/22‑1 (MQ=255) aacttaagggcggcgtgttacctggcgagcaagaaatcgacactgttcgtgcattgaagaaacgcttcccggatgcgcggattACCGTTGGGATCAACGGTAATc > 2:184039‑M1/84‑105 (MQ=255) gATCTTCGGCATATGTTAGTACATCATTCAGCTTTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCa < 1:196601/149‑1 (MQ=255) tAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGccc < 1:283525/149‑1 (MQ=255) aGAACATCATTCAGCCTATTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCtt < 2:344944/149‑1 (MQ=255) tcgacactgttcgtgcattgaagaaacgcttcccggatgcgcggattACCGTTGGGATCAACGGTAATCCGCGCATCCGGGa < 1:362654‑M1/35‑1 (MQ=255) tcgacactgttcgtgcattgaagaaacgcttcccggatgcgcggattACCGTTGGGATCAACGGTAATCCGCGCATCCGGGa > 2:362654‑M1/48‑82 (MQ=255) tcatTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGc < 1:395213/85‑1 (MQ=255) tcatTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGc > 2:395213/1‑85 (MQ=255) atTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGCTAACACGCCGCCCTTAAGTTTGa > 2:32134/1‑149 (MQ=255) cAGCCCTTTGCATAAAGAACTGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGAGTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGaaag > 2:380848/1‑148 (MQ=255) tAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGt > 2:81641/1‑149 (MQ=255) cTTCATCAAGCAGCCATGCACCGTTGGGCTCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCtgt > 2:205491/1‑149 (MQ=255) gcagcCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTcc < 2:302947/149‑1 (MQ=255) | GCGACGGGCAAGCCGGTCGCCCGTCGAAATTCCGCCATCACTTCACGTCCGGAGAAGCCCTGTTCTGCGCCGCATGGATCTTCGGCATAGGTAAGAACATCATTCAGCCCTTTGCATAAAGAAATGGCTTCATCAAGCAGCCATGCACCGTTGGGATCAACGGTAATCCGCGCATCCGGGAAGCGTTTCTTCAATGCACGAACAGTGTCGATTTCTTGCTCGCCAGGTAACACGCCGCCCTTAAGTTTGAAATCTTTAAAGCCGTAGCGATCCTGTGAGGCTTCC > NC_000913_3_vch_tpiA/2919890‑2920174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |