| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 3674455 | NA (NA) | 4 (0.170) | 4/276 | 2.9 | NA | noncoding (75/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_vch_tpiA | = 3674459 | NA (NA) | noncoding (79/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
CGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCATATAAATCCAGTTGGTAACTTTTATTTAAC > NC_000913_3_vch_tpiA/3674311‑3674599 | cggcgTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAAAGCGGCTTTAAAAGATTCCGGATGCGGCGAACGAGCAGGAGCTGGCATACTGGTTCGGTCGGCCTGGCGCCCCGTAGGCCGgatgcgatgctggc > 2:422775/1‑145 (MQ=255) ttGCCACCGCCGAATATAACGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATGCGATGCtggcgcatcttat < 1:422775‑M1/149‑14 (MQ=255) cACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAAGCCGGATAAGATGCGCCAGCATCGCATCCga > 1:158260/1‑148 (MQ=255) cgtcgAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCACATCCGGAta < 1:109780/146‑1 (MQ=255) aagataaagACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCTTGGCTCCCCGTAGGCCGGATGCGATGCtggcgcatcttatccggcctacggg < 2:413748‑M1/146‑26 (MQ=255) gacCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATCCGCCAGCAACGAATCAGGCTATAATCCTCACATAAcc > 1:205581/1‑149 (MQ=39) acCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACct < 1:271828/149‑1 (MQ=255) aTGCCGGGGAAATCGCAGCCTTATGATAGGCGGGATGCGGCGTAAACGCCTTATCCGGTATACGATTTTATTCGGACTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAAc < 1:15859/149‑1 (MQ=39) cGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATACGCACATAACCTCTTGAAACCCGTCCCCaaacc > 2:120482/1‑145 (MQ=255) aaaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAACCTCGTCCCCAGAGCCTCTTCAGcc < 2:151196/149‑1 (MQ=255) aaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCa > 2:285297/1‑149 (MQ=255) ccGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCtggcgcatcttatccggcctacggggagccag > 2:120234‑M1/1‑74 (MQ=255) ccGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCtggcgcatcttatccggcctacggggagccag < 1:120234‑M1/106‑33 (MQ=255) gaggcggcgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTgg < 2:141778/146‑1 (MQ=255) cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgcatcttatccggcctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccgg > 2:120234‑M2/1‑32 (MQ=255) cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgcatcttatccggcctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccgg < 1:120234‑M2/106‑75 (MQ=255) cTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTACATTCCAACTCATAACCCCAGCATATAAAt > 2:216636/1‑149 (MQ=255) gCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCATATAAATCCa < 1:285297/149‑1 (MQ=255) cccGTAGGCCGGATAAGATGCGCCAgcatcgcatccggcctacggggagccaagccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcgggtcgtctttatctt < 2:413748‑M2/149‑125 (MQ=255) aTAAGATGCGCCAgcatcgcatccggcctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctattttaaggctgcgttttccccggcattcgcgggtcgtcgttatattcggcggtggcaa < 1:422775‑M2/149‑137 (MQ=255) gATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTTAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCATATAAATCCATTTGGTAACTTTTATTTAAc > 2:149984/1‑149 (MQ=255) | CGGCGTGGATTGCCACCGCCGAATATAAAGACGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAACAATTTCATTCCAACTCATAACCCCAGCATATAAATCCAGTTGGTAACTTTTATTTAAC > NC_000913_3_vch_tpiA/3674311‑3674599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |