New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	4559149 =	21 (0.840)	3 (0.130)	3/274	3.3	13.0%	noncoding (4559149/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	4559173 =	20 (0.840)					noncoding (4559173/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGATTCTGCCGCCATATTGGCCAGGTGATAAACGTCCGGTGCGGCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTA  >  NC_000913_3_vch_tpiA/4559001‑4559291                                                                                                                                                     |                                                                                                                                               ggtaTTCTCCCGCCATGTTGGCCAGGTGCTAAACGTCCGGTGCGGCAGAACGGTTATCAGAGATGGCGCATTTCCCGCCAATCACACGCTCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATaa                                                                                                                                                <  2:341687/146‑1 (MQ=255)   gATTCTGCCGCCATATTGGCCAGGTGATAAACGTCCGGTGCGGCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGGCATGATAAgc                                                                                                                                              >  1:18650/1‑149 (MQ=255)     ttCTGCCGCCATATTGGCCAGGTGATAAACGTCCGGTGCGGCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAgcgc                                                                                                                                            <  1:425982/149‑1 (MQ=255)      tgtGCCGCGATGTTGCCAAGGTGATAAACGTGCGGCGCGGCAGAACGGTGATCATAGATGGCGCATTCCACGCCAATCACACGATCGATAATCGCCACCCCTTTTTCCCCGGAACCCGTAATGTTGCTGGAAGCGACATGATAAGCGcc                                                                                                                                           <  2:252623/147‑1 (MQ=255)                      gcAGGGGGTAAAGGTCCGTCGCGCTAGAACGGTGATCTGTTATGGCGCATTCCACGCCAATCCCACGATTGCTATTCGTCACGGTTTTTTCCTCGGATCCCGTAATGGTGCGGGAAGGGACATGACAAGCGCCGGTCAGCATCCTGgcg                                                                                                                           <  2:281667/148‑1 (MQ=255)                          gTGATAAACGTCCGGTGCGGCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGa                                                                                                                       >  1:332215/1‑149 (MQ=255)                           gggtgaaCGTCCGGTGCGGCGGAAGGGTGATCAGAGATGGCGCATTTCACGACAATCACACGATCGATACTCGCCTCGTCTTTTTCCGCGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGAt                                                                                                                      <  2:70687/144‑1 (MQ=255)                                    tcaggggCGGCAGAGCGGTGGTCAGGGATGGCGCGTTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCATGGACCCCGGAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGGTGCctacttg                                                                                                             <  2:75150/143‑2 (MQ=255)                                          gcgcCAGAACGGTGATCACAGATGGCGCATTTCCCGCGAATGACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCTAGGGCCGTATGCCTTCTTCATTGAg                                                                                                       <  2:248729/149‑1 (MQ=255)                                           cGGCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATTACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAgc                                                                                                      <  1:396010/149‑1 (MQ=255)                                            ggCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGACGCCTTCTTCATTGAgcg                                                                                                     >  2:414184/1‑149 (MQ=255)                                             gCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAgcgc                                                                                                    >  2:116859/1‑149 (MQ=255)                                                                    gcATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGAACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGAtt                                                                             >  1:125222/1‑149 (MQ=255)                                                                        ttCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGCGATTCCgg                                                                         >  1:259314/1‑149 (MQ=255)                                                                          cACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGt                                                                       >  1:424822/1‑149 (MQ=255)                                                                                             atAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGGGAGATAGAGTCTGt                                                    >  2:167201/1‑149 (MQ=255)                                                                                                  cGCCAAGTCTTGTTCCACTGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCca                                               <  1:408954/149‑1 (MQ=255)                                                                                                   gCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCCAGAGATAGAGTCGGTGCCcag                                              >  2:391146/1‑149 (MQ=255)                                                                                                                 cACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACtg                                >  1:53326/1‑149 (MQ=255)                                                                                                                         ccGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTATTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAAATAGAGTAGGTGCCAAGCAGACAAACCACttacgtgacg                        >  1:194968/1‑149 (MQ=255)                                                                                                                                       gAAGGGACATGATAAGCGCCGGTCAGCGTCCTGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAg          >  1:215518/1‑149 (MQ=255)                                                                                                                                               aTGATCAGCGCCGGTCAAGATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTa  <  2:18650/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               GGGATTCTGCCGCCATATTGGCCAGGTGATAAACGTCCGGTGCGGCAGAACGGTGATCAGAGATGGCGCATTTCACGCCAATCACACGATCGATAATCGCCACGTCTTTTTCCACGGAACCCGTAATGGTGCGGGAAGGGACATGATAAGCGCCGGTCAGCATCCAGGCGCTGATGCCTTCTTCATTGAGCGCACGGGTCTTGGCGAGCAGGGATTCCGGGTGGCGAGAGATAGAGTCGGTGCCCAGCAGACCAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTA  >  NC_000913_3_vch_tpiA/4559001‑4559291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.