New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1096961 =	13 (0.520)	4 (0.240) +GGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTT	3/192	2.4	31.5%	noncoding (1096961/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1097243 =	NA (NA)					noncoding (1097243/4641682 nt)	repeat_region	repeat region

GTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC  >  NC_000913_3_vch_tpiA/1097113‑1097282                                                                                                                                   |                                        ctctgcccccGGTGGGGGGTTCGCACCCCCCCGGTGTGTGCAATAAACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCg                       <  1:434042/144‑1 (MQ=11)          accggggggCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCa                                     >  1:294143/6‑126 (MQ=18)          accggggggCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCa                                     <  2:294143/121‑1 (MQ=18)                    tctccagccccccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTg    <  1:354230/142‑1 (MQ=17)                      ctcATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGGGCGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTACGGGCGGCCCCACCACTGCGTTCACGGTCCGTCCCACTGGc  >  1:213614/1‑149 (MQ=11)                                                                                                                                   |                                        GTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC  >  NC_000913_3_vch_tpiA/1097113‑1097282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.