New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4542720	31 (0.650)	6 (0.140)	6/268	5.4	15.6%	noncoding (4542720/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4543016	36 (0.810)					noncoding (4543016/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGT  >  NC_000913_3_vch_tpiA/4542572‑4542867                                                                                                                                                     |                                                                                                                                                    tgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGCCAAGTGGGGCCa                                                                                                                                                     >  1:737230/1‑149 (MQ=255) tgCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCa                                                                                                                                                     >  1:331966/1‑149 (MQ=255)    gTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc                                                                                                                                                  >  2:443506/1‑149 (MQ=255)          ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAAACAATTGGGGCCAACCTGTcaa                                                                                                                                            >  2:267151/1‑147 (MQ=255)                   aagctcctCGTTTAGACGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa                                                                                                                                   <  1:697599/147‑1 (MQ=255)                      ctgcaCGGTATGACGGAATATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGTCCAAACTGTCCATATCataaataa                                                                                                                                <  2:679694/149‑1 (MQ=255)                                    ggATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTATCCATAACATAAATAAGTTACCTAtttttt                                                                                                                  >  2:397391/1‑149 (MQ=255)                                          agggAAAGAAATAAGCGCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTAGTAATAATAAAGTTAAAAAAACAAATAAATACAAGACAATAGGGACAAAACTGTCGATATCATAAAAAAATTACATATTTTTTCTCAAg                                                                                                            >  2:707525/2‑149 (MQ=255)                                            ggAAAGAAATAATGTCATAAACGACAACTCAAAAATAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGTGTCCAAACTGTCCATATAATAACTACGTTACGTATTTTTTCTCAACCa                                                                                                          >  2:68923/1‑149 (MQ=255)                                             gaaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCAAAACTATCAATATCATAAAAAAGTTACGTATTTTTTATCacgaat                                                                                                         >  1:797240/1‑144 (MQ=255)                                                    ataatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTCTTTTTTCTCAAGCATAAAAata                                                                                                  >  2:780280/1‑149 (MQ=255)                                                            aTAAGCGAAAAAGTAAAAAGAGAAGAGGTTTGATTTAACTTTTTGATAATAAAGTTAAAAAAACAAATAAAGACAAGACAATTGGGGCTAAACTGTCCATATCATAGATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                                          <  2:104564/149‑1 (MQ=255)                                                              aaaCGAAAAATTAAAAAGAGGAGAGGTTTGATTTAACTTATTGAGAATTAAGTTAAGAATAGAATTAAATACACGACAATTGGGGTCAAACTGTCTATATCTTTAATATGTTTTGTATTTTTTTTGAGGCTTTAAATTTTTaaaagctg                                                                                        >  2:512539/1‑145 (MQ=255)                                                                  gAAAAATTAAAAAGAGAAGAGATTTGATTTAACTTATTAATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTAGGGCCAAACTGTCAATATCATAAATAAGTCACGTATTTTTTCACAAGCATAAAAATCATAAAAAAcaacaa                                                                                    >  2:117027/1‑149 (MQ=255)                                                                     aaaTTAAAAAGAGAAGAGGTTTGATGTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAATTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaaa                                                                                 <  1:751427/149‑1 (MQ=255)                                                                         tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAt                                                                             >  2:651025/1‑149 (MQ=255)                                                                                    gagGTTTGATTTAACTTATTGATAATAAAGGTAAAAATTCAAACAATTACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTg                                                                  <  1:647298/149‑1 (MQ=255)                                                                                        tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAACTATTAAAAAACGACAAAAAGCATCTAACTGTTTAatat                                                              >  1:183417/1‑149 (MQ=255)                                                                                                aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAatta                                                      <  1:456658/149‑1 (MQ=255)                                                                                                   ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                   <  2:643747/149‑1 (MQ=255)                                                                                                   ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                   <  1:49055/149‑1 (MQ=255)                                                                                                       tGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAt                                               >  2:812044/1‑149 (MQ=255)                                                                                                          taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGt                                            >  1:15530/1‑149 (MQ=255)                                                                                                                      aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTca                                >  1:294810/1‑149 (MQ=255)                                                                                                                        aaaCAAAGAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAATCGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcaca                              <  2:615702/149‑1 (MQ=255)                                                                                                                            aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTAACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAGTGTAAATAAATTACACATCAc                          >  1:452212/1‑149 (MQ=255)                                                                                                                                  ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGc                    <  1:7510/149‑1 (MQ=255)                                                                                                                                           aaTTGGGGCCAATCTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTaa           <  1:100379/149‑1 (MQ=255)                                                                                                                                             ttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAg         <  2:15530/149‑1 (MQ=255)                                                                                                                                                 ggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                   <  2:441814/87‑1 (MQ=255)                                                                                                                                                 ggCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                   >  1:441814/1‑87 (MQ=255)                                                                                                                                                  gCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAc    <  2:108945/149‑1 (MQ=255)                                                                                                                                                    cAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACATAAAGCATCTAACTGTTTAATATGTAAAATATTTATATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAACTAAAGt  >  2:607988/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGT  >  NC_000913_3_vch_tpiA/4542572‑4542867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.