New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2035286 =	26 (0.550)	7 (0.160)	6/262	5.3	20.3%	noncoding (2035286/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	2035318 =	31 (0.710)					noncoding (2035318/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.

CTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCTTTATGAATTAATCC  >  NC_000913_3_vch_tpiA/2035177‑2035465                                                                                                                                              |                                                                                                                                                    cTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAGCTGCACACTAGACTGAGTTCGTCCCTCATCGAACTTAGGCTTTTTTAtt                                                                                                                                              >  2:723231/1‑149 (MQ=255)  atCTACCCAGAAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCCTAGTCTACAAGTTCTAATCAGTCAACTCGCTGTGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTg                                                                                                                                             <  1:277271/148‑1 (MQ=255)   tCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTCGTCTACCAGTTCGAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTAAGATCGCCCCTGATCGACATCAGGCTTTTTTTTTgt                                                                                                                                            >  2:172863/1‑148 (MQ=255)                  gCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGGTGCGGCGTGTTACTGTAAAAATGAACACTAGCCTGAGTTCGTCGCGCATCGAACTCAGGCTGTGTTATTGGCATTTCATCTCCGTc                                                                                                                             >  1:282080/1‑149 (MQ=255)                     tCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGc                                                                                                                          >  2:541483/1‑149 (MQ=255)                            cGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCacac                                                                                                                   >  1:628831/1‑149 (MQ=255)                                  tatCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAAtt                                                                                                             <  2:679875/149‑1 (MQ=255)                                    tCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTAtt                                                                                                                                              >  1:137922/1‑114 (MQ=255)                                    tCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTAtt                                                                                                                                              <  2:137922/114‑1 (MQ=255)                                     cGTTGCTGTGGGTTTAGTCTACCAGTTCGAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGACCACTAGCCTGAGTTCGTCCTTCATTGAACTCAGGCTGTTTGCTTTGCATTTCACCTCCATCTGGCGCTGACGTAATTGcc                                                                                                          <  2:725270/149‑1 (MQ=255)                                                     gTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACa                                                                                          <  2:522131/149‑1 (MQ=255)                                                      tCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAg                                                                                         >  1:768241/1‑149 (MQ=255)                                                           cAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCGCATCAAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGCTACAGcccac                                                                                    >  2:82744/1‑145 (MQ=255)                                                              ttCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTAc                                                                                 >  1:88166/1‑149 (MQ=255)                                                              ttCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTACCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCCATACAGCACCTTAc                                                                                 >  2:164344/1‑149 (MQ=255)                                                                    tCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTTGCATTTCATCTCCATCTGCGCCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGcc                                                                           <  2:658626/149‑1 (MQ=255)                                                                           acccGCTGCGGCGGGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCACATCGCAGTCTGTTTTTGTTATTTGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTg                                                                    <  2:715767/146‑1 (MQ=255)                                                                                 tGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACCCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACaa                                                              <  2:628831/149‑1 (MQ=255)                                                                                  gcggcgTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAAt                                                             <  2:768241/149‑1 (MQ=255)                                                                                   gggcgTGTTACTGGAAAACTGAACACTAGCCTTAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGTCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATa                                                            <  2:27712/148‑1 (MQ=255)                                                                                          ttACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGTCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCaa                                                     <  1:12585/149‑1 (MQ=255)                                                                                          ttACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCaa                                                     >  1:29721/1‑149 (MQ=255)                                                                                                      tGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCtt                                         <  1:323045/149‑1 (MQ=255)                                                                                                                 cTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTTTTTTTTTTTCTTCTCAATCTGCGGCACCCGCAATTGCCCAAGCATATCACTACAGCTCCTTCCCCTGCCCCTCCTGGCCCAATACCATCAACCACCTCCTCTTCACGCTAccac                              >  2:203048/1‑149 (MQ=255)                                                                                                                  tGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGCACCACTAACATCAACCAACTCCTCTTCATGCTAACAcc                             >  2:542310/1‑149 (MQ=255)                                                                                                                          tCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCa                     >  2:640396/1‑149 (MQ=255)                                                                                                                          tCCCTCACCCAACTCAGGCTTTTTTATTGACATTTCATCTCCAGCTGCGGCACACGAAATTGCCGAAGCATATCTATACAGCACCTTACCCAGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCa                     <  1:285718/149‑1 (MQ=255)                                                                                                                            ccTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTaa                                 <  1:96825/135‑1 (MQ=255)                                                                                                                            ccTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTaa                                 >  2:96825/1‑135 (MQ=255)                                                                                                                             cTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCGACCAGCTACTCTTCAAGCTAACACCCAAATGCAttt                  >  2:812592/1‑149 (MQ=255)                                                                                                                               cATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCt                <  1:808682/149‑1 (MQ=255)                                                                                                                                         aGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCTTTATGAATTa      >  2:653514/1‑149 (MQ=255)                                                                                                                                          ggCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCTATACAGCACCTTACCCTGCCCCTCCTTGCACAATAACATCAACCAGCTACTCTTCAATCTAACACCCAAATGCATTTCTTTATGAATTaa     <  2:627031/149‑1 (MQ=255)                                                                                                                                           gCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCTTTATGAATTAAt    >  1:511636/1‑149 (MQ=255)                                                                                                                                             ttttttATTGCCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCGACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCTTTATGAATTAATcc  <  1:812592/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                    CTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCTTTATGAATTAATCC  >  NC_000913_3_vch_tpiA/2035177‑2035465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.