New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 2347214	44 (0.930)	5 (0.110)	5/272	6.0	8.9%	noncoding (55/203 nt)	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences
	?	NC_000913_3_vch_tpiA	4027525 =	61 (1.350)					noncoding (204/281 nt)	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCC  >  NC_000913_3_vch_tpiA/4027377‑4027666                                                                                                                                                     |                                                                                                                                              ccGGATAAGGCGGTTACGCCGCATGCGGTAAGTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGTATGATGCCTGATg                                                                                                                                               <  2:247580/149‑1 (MQ=17)       aaGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGc                                                                                                                                         >  1:464320/1‑149 (MQ=255)          ggcattAAGCCGCATGCGGCAATTGGTGCACGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTgg                                                                                                                                      <  2:514174/145‑1 (MQ=255)          gCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTgg                                                                                                                                      >  2:441106/1‑149 (MQ=255)          gCGTTTACGACGCATGCGGCAATTTGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTgg                                                                                                                                      <  1:213491/149‑1 (MQ=255)                   ccgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTa                                                                                                                             <  1:650010/149‑1 (MQ=255)                    cgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                                            >  1:156081/1‑149 (MQ=255)                          cGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGcc                                                                                                                      >  2:163899/1‑149 (MQ=255)                           ggCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGACTACAAATAGTCCGAACCGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATCATGCCTGATGCGACACTGGCGCGCCTTATCAGGCCt                                                                                                                     >  1:633489/1‑149 (MQ=17)                              aactGGTGCATGAGGCCCGATGCCACGCTGTCGCGCGTTATCGTGCGTCCAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTCCGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACa                                                                                                                  <  2:816566/146‑1 (MQ=14)                              aaTTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACa                                                                                                                  <  1:441106/149‑1 (MQ=255)                                ctGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAtt                                                                                                                <  1:359520/148‑1 (MQ=255)                                  ggTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAAGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTgg                                                                                                              >  1:71271/1‑149 (MQ=255)                                    tgaaggatgCCGGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTg                                                                                                            <  2:77519/144‑1 (MQ=255)                                     gCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGc                                                                                                           >  1:519174/1‑149 (MQ=255)                                     gCATGATGCCTGATGCGACGCTGTCGCGCCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGc                                                                                                           <  1:104729/149‑1 (MQ=255)                                     gCAGGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGc                                                                                                           <  2:54394/149‑1 (MQ=255)                                        tgatgCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCgg                                                                                                        >  2:247600/1‑149 (MQ=255)                                           tgCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACTTGTATCATGGTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGGTc                                                                                                     >  1:402400/1‑149 (MQ=17)                                             ccTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCgg                                                                                                   <  1:448872/149‑1 (MQ=255)                                               tGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGACCGGTa                                                                                                 >  1:591563/1‑149 (MQ=255)                                                   gCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGAcc                                                                                             <  1:408388/149‑1 (MQ=255)                                                     gACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCgg                                                                                           >  1:800968/1‑149 (MQ=255)                                                     gACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCgg                                                                                           >  1:397765/1‑149 (MQ=255)                                                      aCGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGa                                                                                          <  2:294831/149‑1 (MQ=255)                                                       cGCTGTCGCGTCTTATCGCGCCTACAAATAGTCCGAACCGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGAt                                                                                         <  1:63210/149‑1 (MQ=255)                                                          tggcgcgTCGTATCGGGCCTACAAATAGTCCGAACCGGAGGCCGGAGAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAg                                                                                      <  2:510486/146‑1 (MQ=18)                                                          tGTCGCGGCTTATCCTGCCTACAAAGAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATTCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAg                                                                                      <  2:284958/149‑1 (MQ=255)                                                            tCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGc                                                                                    <  2:519174/149‑1 (MQ=255)                                                               cgTCTTATCGGGCCTACAAATAGTCCGAACCGTAGGCCGGAGAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGATGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGtt                                                                                 <  1:267260/149‑1 (MQ=255)                                                                 tCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCa                                                                               >  1:45646/1‑149 (MQ=255)                                                                     aTCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCAcgcc                                                                           <  1:526695/149‑1 (MQ=255)                                                                      tCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCAcgccg                                                                          >  1:482913/1‑149 (MQ=255)                                                                      tCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAAGCGTGCAcgcct                                                                          >  2:786106/1‑148 (MQ=255)                                                                          gCCTACAAATAGGCCGAACCGTAGGCCGGATAAGGCGTTTAGGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATc                                                                      <  2:67165/149‑1 (MQ=255)                                                                           cttACAAATAGTCTGAACCGTAGGCCGGATAAGGCGTTTACGCAGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATcc                                                                     <  1:110726/147‑1 (MQ=255)                                                                           ccTACAAATAGTCCGAACCGTAGGCCGGATAAGGGGTTTACGCCGCATCCGGCAATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATcc                                                                     <  1:741906/149‑1 (MQ=255)                                                                            cTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCg                                                                    <  2:16952/149‑1 (MQ=255)                                                                                aaaTAGTCCGAACCGCAGGCTGGATAAGGGGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCaa                                                                <  2:584345/149‑1 (MQ=255)                                                                                   tAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTg                                                             <  2:199017/149‑1 (MQ=255)                                                                                     gTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGt                                                           <  1:609064/149‑1 (MQ=255)                                                                                      tCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGtt                                                          <  1:238821/149‑1 (MQ=255)                                                                                      tCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCGGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATGAGCGGGTCACCCCGCATACGGCaaacagct                                                          >  2:368377/1‑143 (MQ=18)                                                                                        cGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCTGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTaa                                                        >  1:816495/1‑149 (MQ=255)                                                                                          aaCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAAc                                                      <  1:435146/149‑1 (MQ=255)                                                                                             cGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCg                                                   <  1:343811/149‑1 (MQ=255)                                                                                                            gCGTTTACGCCGCATCCGGCAATTGGTGCATGATGACTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCCTCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGc                                    >  2:728927/1‑149 (MQ=255)                                                                                                                    gccgcATCCGGCAATTGGTGCATGATGCCTGAGGGGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGGTAAGGCGTTCACCCCGCATCCGACAAGTGATTAAACCCGCTCAAACACCGTCGCAATACCCt                            >  2:116840/1‑149 (MQ=37)                                                                                                                     ccgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTGTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCCAACACCGTCGCAATACCCTg                           >  2:219857/1‑149 (MQ=255)                                                                                                                      cgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTTGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGa                          >  1:289607/1‑149 (MQ=255)                                                                                                                         aTCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCAGGCCGCATCCGGCAAGGGGTGAACCCCGCTCAAACACCGTCGAAATACCCTGAccc                       >  2:90269/1‑149 (MQ=37)                                                                                                                             ggCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGAc                   <  2:464320/149‑1 (MQ=255)                                                                                                                                 aTTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATACGGCAATTGGTTAAAAACGATACCAAACCGTCGCAATACCCTGACCCAGACCGAt               >  1:321194/1‑149 (MQ=25)                                                                                                                                 aTTGGTGCATGAGGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGAt               <  2:522304/149‑1 (MQ=255)                                                                                                                                     gTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGACAAGACGAACTCAGCGATGCGGGCAAGGGGTTCCTATGTCTCAAACACCGTCGCAATACCCTGACCCAGACCGATacac           <  2:800968/149‑1 (MQ=21)                                                                                                                                      tGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATCcaca          >  1:307855/1‑149 (MQ=255)                                                                                                                                       gCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACCCAt         >  2:334867/1‑149 (MQ=255)                                                                                                                                        cATGATGCCTGATGCGTCGCTGGCGCATCTTATCAGGCCTACATTGGTGCAGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACAtc        <  1:16441/149‑1 (MQ=255)                                                                                                                                          tgatgCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGc                                                                                                           >  2:580765/1‑48 (MQ=255)                                                                                                                                          tgatgCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGc                                                                                                           <  1:580765/48‑1 (MQ=255)                                                                                                                                            atgCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACAtcgtcg    >  1:641953/1‑149 (MQ=255)                                                                                                                                              gCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGACCGGTAGACCGGATACGGCGTTAACGCCGAATCCGGGAAGTGGTTAAACCCGCTCAAACCCCGCCGCAAAACACTGCCCCAGCCCAGTACCCATCGTcccc  >  2:189537/1‑149 (MQ=25)                                                                                                                                                     |                                                                                                                                              CCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCC  >  NC_000913_3_vch_tpiA/4027377‑4027666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.