New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 3508072	58 (1.220)	7 (0.150)	7/276	5.2	11.1%	noncoding (3508072/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 3508093	56 (1.220)					noncoding (3508093/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGCCGATGGTGTCGAACTGCACGTACGCGCCGAGATCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGCCGATCTCCGCGATGATCCCGGCTTTCAG  >  NC_000913_3_vch_tpiA/3507953‑3508239                                                                                                                                             |                                                                                                                                                   ttGCCGATGGTGTCGAACTGCACGTACGCGCCGAGATCGATCATCTTCAAAGTGGTGTCGAGGTTGTCTTTCAGATCGCCGTGACCCACAGTGACGCGCGAAAGATCAACCCCGTTGGCTTCTCACAACGCCAGTTGCTCCAGGCCCAt                                                                                                                                            >  1:425116/1‑149 (MQ=255)    ccGATGGTGTCGACCTGCACCGACGCGCCGAGATCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCACCCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGt                                                                                                                                         <  1:117110/149‑1 (MQ=255)     ctctGGTGTCGAACTGGACGTCCGCGCCTAATTCGATCATGTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTg                                                                                                                                        <  2:792517/146‑1 (MQ=255)     cGAGGGTGGTGAACTGCATGTACGCGCCGAGATCGATCATCTTCTAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGTTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTg                                                                                                                                        <  2:660149/149‑1 (MQ=255)      gATGGTGTCGAACTGCACGTACGCGCCGAGATCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGc                                                                                                                                       >  1:728814/1‑149 (MQ=255)      gATGGTGTCGAACTGCACGTACGCGCCGAGATCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATAAACCCCGTGCGCTTGTAGCAACGCCAGCTGCTCCAGCCCCATCGTGc                                                                                                                                       >  1:778977/1‑149 (MQ=255)             tCGAACTGCACGTACGCGCCGAGATCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAacga                                                                                                                                >  2:157287/1‑149 (MQ=255)              cGAACCGCACCGCCGGGCCGAAATCGACACTGTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTCTAGCAATGCCAGTTGCTCCAGCCCCATCGTGCTGatcccc                                                                                                                               <  2:145637/149‑6 (MQ=255)                 aCTGCACGTACGCGCCGAGATCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTa                                                                                                                            >  1:713398/1‑149 (MQ=255)                  cggCACGTACGCGCCGAGATCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAGCCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTAt                                                                                                                           <  2:151432/147‑1 (MQ=255)                   tGCACGTACGCGCCGAGATCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAGCGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATg                                                                                                                          >  1:69454/1‑149 (MQ=255)                      aCGTACGGGCCGAAATCTATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGt                                                                                                                       <  1:133273/149‑1 (MQ=255)                         tACGCGCCGAGCTCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGTTCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTATCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGga                                                                                                                    <  1:650682/149‑1 (MQ=255)                                cGAGATCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCggg                                                                                                             >  1:695341/1‑149 (MQ=255)                                    atcgatcATCTGCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTc                                                                                                         >  1:512744/1‑149 (MQ=255)                                       gatcATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTTACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGCACGACGTATGCGTGGAGATCGGGCGTCCgg                                                                                                      >  2:646239/1‑149 (MQ=255)                                       gatcATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGCCGTCCgg                                                                                                      >  2:359709/1‑149 (MQ=255)                                         tcatcTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGCGCGTCCGGTc                                                                                                    >  2:95304/1‑149 (MQ=255)                                            tcgtgaaaaGGGTGTCGAGGTTGTCTGTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGGGCTGAACGACGTATGCGTGGAGCTCGGGCGTCCGGTCTgg                                                                                                 <  2:369431/144‑1 (MQ=255)                                            tcTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTTCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTgg                                                                                                 <  2:782058/149‑1 (MQ=255)                                            tcTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTgg                                                                                                 <  1:327603/149‑1 (MQ=255)                                              ttCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGAGCGTCCGGTCTGGtt                                                                                               >  1:7012/1‑149 (MQ=255)                                              ttCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCAAGTTGCTTCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGtt                                                                                               >  2:629991/1‑149 (MQ=255)                                                   aaTGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATgcg                                                                                          >  2:276319/1‑149 (MQ=255)                                                      gttggagAGCTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCca                                                                                       <  2:68610/143‑1 (MQ=255)                                                               gTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCAAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTACGGTCTGGTTAAGCGCcagcgcagcgc                                                                              >  2:435547/1‑148 (MQ=255)                                                                     tttCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATGGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCaataa                                                                        >  1:280140/1‑149 (MQ=255)                                                                     tttCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCcataa                                                                        >  1:99270/1‑149 (MQ=255)                                                                     tttCAGATCGCAGTGACCAACGGTGAAGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCaataa                                                                        >  2:390802/1‑149 (MQ=255)                                                                       tCAGACCGCAGTGACGAACGGTCTCGCCCGAAAGATCAACCCCGGGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCaataaat                                                                      <  1:590209/149‑1 (MQ=255)                                                                         agttCGGAGCGACGAACGGCGACCCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGCACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATAc                                                                    <  1:264581/146‑1 (MQ=255)                                                                          gATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATAcc                                                                   <  2:512744/149‑1 (MQ=255)                                                                          gATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATAcc                                                                   >  1:342904/1‑149 (MQ=255)                                                                           aTCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGTaataaacccct                                                                  >  2:545059/1‑144 (MQ=255)                                                                            tCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCtt                                                                 <  1:390802/149‑1 (MQ=255)                                                                            tCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCGTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCtt                                                                 <  1:172637/149‑1 (MQ=255)                                                                                 gTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCGGCGCAGCGGCAATAAATACCTTCGCtt                                                            >  1:227743/1‑149 (MQ=255)                                                                                  tGACCAACGGTGACGCGCGAAAGAGCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTc                                                           <  1:628588/149‑1 (MQ=255)                                                                                         cGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAgcggc                                                    <  2:69454/149‑1 (MQ=255)                                                                                              aCGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAAt                                               <  1:157287/149‑1 (MQ=255)                                                                                                 cgcgAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCtt                                            >  1:227784/1‑149 (MQ=255)                                                                                                        gATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCCGCGGCAATAAATACCTTCTCTTCACGCGGGGTGATCTTTCCttgg                                     >  1:341020/1‑147 (MQ=255)                                                                                                          tCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCt                                   <  2:471289/149‑1 (MQ=255)                                                                                                               cccGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGc                              <  1:276319/149‑1 (MQ=255)                                                                                                                ccGTGGGCTTGTAGCCACGCCAGTGGCCCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGcc                             <  1:373736/149‑1 (MQ=255)                                                                                                                 cGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGcag                            >  1:96891/1‑147 (MQ=255)                                                                                                                   tGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCTCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGCCGAt                          <  1:418088/149‑1 (MQ=255)                                                                                                                      gCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGCCGAtctc                       >  1:191499/1‑149 (MQ=255)                                                                                                                           tAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTgg                                                                                                 <  1:493318/70‑1 (MQ=255)                                                                                                                           tAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTgg                                                                                                 >  2:493318/1‑70 (MQ=255)                                                                                                                           tAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGCCGATCTCCGCga                  <  2:227784/149‑1 (MQ=255)                                                                                                                            aGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGTGTAATCTTTCCTTCGCTGGTGCCGATCTCCGCgat                 <  2:728814/149‑1 (MQ=255)                                                                                                                            aGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGCCGATCTCCGCgat                 >  2:110812/1‑149 (MQ=255)                                                                                                                              aaaCGACAGTTGGTCCAGCCCCATCTGTCTGAACGACGTTTGCGTGGAGATCGGGCGTCCGGTCTGTTTATGCGCTAGCGCAGCGGCAATAAATACCTTCTCCTCCCGCGGCGTAATCTTTCCTTCGCTGCTGCCGATCTCCGCgatga               <  2:129676/148‑1 (MQ=255)                                                                                                                                   ccAGGTGCTGCAGCCCCAGCGGGCGGAACGACGTATGCGTGAGGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAGATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGCCGATCTCCGCGATGATCCCg          <  2:526165/149‑1 (MQ=255)                                                                                                                                           gccAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGATCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGCCGATCTCCGCGATGATCCCGGCTTTCAg  <  1:299894/148‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   TTGCCGATGGTGTCGAACTGCACGTACGCGCCGAGATCGATCATCTTCAAAATGTTGTCGAGGTTGTCTTTCAGATCGCAGTGACCAACGGTGACGCGCGAAAGATCAACCCCGTGGGCTTGTAGCAACGCCAGTTGCTCCAGCCCCATCGTGCTGAACGACGTATGCGTGGAGATCGGGCGTCCGGTCTGGTTATGCGCCAGCGCAGCGGCAATAAATACCTTCTCTTCCAGCGGCGTAATCTTTCCTTCGCTGGTGCCGATCTCCGCGATGATCCCGGCTTTCAG  >  NC_000913_3_vch_tpiA/3507953‑3508239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.