New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	411180 =	42 (0.890)	6 (0.130)	6/272	5.5	13.3%	noncoding (103/191 nt)	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_vch_tpiA	411213 =	38 (0.840)					noncoding (136/191 nt)	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCGGAGTATCCGCCGCTTGCTGGCGCTTATAGCGACC  >  NC_000913_3_vch_tpiA/411072‑411356                                                                                                                                              |                                                                                                                                                cctcatGCCTGATGCGAGGCTTGCCGCGGCTGAGCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGGATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCaaaa                                                                                                                                          <  2:107996/147‑1 (MQ=37)     atGCCTGAGGCGCCGCTTGCCCCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAtgtg                                                                                                                                      <  2:401140/149‑1 (MQ=255)        ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCCACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCa                                                                                                                                   >  1:287200/1‑149 (MQ=255)        ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCGGATGGGACGCTTGCCGCGTCTTATCAGGCCCGCAAAATGTGCCa                                                                                                                                   >  1:110805/1‑149 (MQ=255)         cTGATGCGACGCTTGCCGCGTCTTAGCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAg                                                                                                                                  <  1:698740/149‑1 (MQ=255)                         cgcgTCTTACCAGGCCTACAAAAGGTGCCATATTCTCAAGCAGGAGAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGa                                                                                                                  <  1:364052/149‑1 (MQ=37)                            gTCTTATCAGGCCTACAAAGGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGTTTGCCGCGTCTTATCAGGCCTGCTTAAGTTGCCAGAACCGCGTAGGGCGGATaa                                                                                                               <  2:261513/149‑1 (MQ=37)                               ttATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGACCCGCGGAGGGCGGATCAGGc                                                                                                            >  2:220671/1‑149 (MQ=255)                               ttATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCCGATAAGGCGTTCACGCCGCATCCGGCCATAAGTGCCCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCACAACCGCGTAGGCCGGCTTAGGc                                                                                                            >  2:54954/1‑149 (MQ=37)                               ttACCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGc                                                                                                            <  2:563611/149‑1 (MQ=255)                                      gCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTTCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCCcg                                                                                                     >  1:311677/1‑149 (MQ=255)                                        cTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAg                                                                                                              <  2:330872/138‑1 (MQ=255)                                        cTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAg                                                                                                              >  1:330872/1‑138 (MQ=255)                                         tACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAGGTGCCATAACCGCCTAGGGCGGATAACGCGTTCAcgccg                                                                                                  >  2:797123/1‑149 (MQ=255)                                                 gTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGc                                                                                          >  2:327539/1‑149 (MQ=255)                                                    ccAGAACCGTGGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCTTGATGCGCCGCTTGCCGCGCCTTATCCTGCCTGGCAAATGTGCCAGAACCGCGCAGGGCGGATAAGGCGTTCACGCCGCATCCAGCAAt                                                                                       >  2:91492/1‑149 (MQ=25)                                                    ccAGAACCGTAAGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAAt                                                                                       >  1:512506/1‑149 (MQ=255)                                                            gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATg                                                                               <  2:259594/149‑1 (MQ=255)                                                                     aTAAGGCGTCCACGCCGCATCCGGCAATAACTGCTCCGATGCCTGTTGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCgag                                                                      <  2:110805/149‑1 (MQ=255)                                                                      tAAGGCGTTCACGCCGCATCCGGCAATAAGGGCTCCGATGCCTGTTGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCgaga                                                                     <  1:346753/149‑1 (MQ=255)                                                                                      cATCCGGCAATAAATGCACCGATGACGGATGCGACGCTTGGCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAg                                                     >  2:823757/1‑149 (MQ=25)                                                                                        tCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATaa                                                               >  2:259920/1‑137 (MQ=255)                                                                                        tCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATaa                                                               <  1:259920/137‑1 (MQ=255)                                                                                         ccGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATAAACAAAGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTgg                                                  <  1:24280/149‑1 (MQ=37)                                                                                          cGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGt                                                 >  1:388142/1‑149 (MQ=255)                                                                                           ggCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCACTGGtt                                                >  2:40278/1‑149 (MQ=255)                                                                                               aTAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGc                                            <  2:101458/149‑1 (MQ=255)                                                                                                    tGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCa                                       <  1:220671/149‑1 (MQ=255)                                                                                                       taggATGCCTGATGCGAGGCTTGCCGCGTTTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATGAGGCGTTCACGCCGCATTCGGCAATAAGTAATGAGCACCGAGACTATAACCTATCCCAGTGGTTTCGCCAGCACCg                                    <  1:684870/146‑1 (MQ=255)                                                                                                       tCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCg                                    >  1:369313/1‑149 (MQ=255)                                                                                                         tgaggCCTGATGTGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGTATCCGGCAAGATGTAACGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCGGa                                  <  2:711071/145‑1 (MQ=25)                                                                                                               cTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCGGTGGTTTCGCCAGCACCGGGGTATcc                            >  1:260095/1‑149 (MQ=255)                                                                                                                 gATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCATAAGACGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGACACGAGACTATAACCTACCCCAGTGTTTTCCCAAGCACCGAAGTATccgc                          >  1:809395/1‑149 (MQ=21)                                                                                                                         gCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCgaga                                                                     <  1:613162/98‑1 (MQ=255)                                                                                                                         gCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCgaga                                                                     >  2:613162/1‑98 (MQ=255)                                                                                                                               cgcgTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCGGAGTATCCGCCGCtt                     >  2:449156/1‑140 (MQ=255)                                                                                                                               cgcgTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCGGAGTATCCGCCGCtt                     <  1:449156/140‑1 (MQ=255)                                                                                                                                 cgTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCGGAGTATCCGCCGCTTGCTGGCGCTta          <  1:459969/149‑1 (MQ=255)                                                                                                                                     ttATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCGGAGTCTCCGCCGCTTGCTGTCGCTtataac      >  1:37373/1‑147 (MQ=255)                                                                                                                                         cAGGCCGGCAAAATGGGCCAGACGCGCCTAGGGCGGATAAGGCGTTCACGCCGCATCCGGAAATAAGTAATGAGCACCGAGACTCTAACCTACCCCAGTGGTTTCGCCAGCACCGGAGTATCCGCCGCTTGCTGGCGCTTATAGCGAcc  <  1:168061/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                CATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCGGAGTATCCGCCGCTTGCTGGCGCTTATAGCGACC  >  NC_000913_3_vch_tpiA/411072‑411356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.