New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1789958 =	32 (1.010)	4 (0.130)	4/276	4.1	11.7%	noncoding (1789958/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1789979 =	30 (0.990)					noncoding (1789979/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTCGAGCAGCTGACTTCCAGCCGTTTACCCCAGTCAGGTGGACGACTGACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCAC  >  NC_000913_3_vch_tpiA/1789811‑1790106                                                                                                                                                    |                                                                                                                                                     aCTCGAGCAGCTGACTTCCAGCCGTTTACCCCAGTCAGGTGGACGACTAACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGtt                                                                                                                                                     >  1:321219/1‑149 (MQ=255)  cTCGAGCAGCTGACTTCCAGCCGTTTACCCCAGTCAGGTGGACGACTGACATAGTCATCATCTCTATCGCTGAAAGGATTTCGAAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCAGCCTTTTCTGCCGCTTCAATCGCCCTTTg                                                                                                                                                    >  1:1177/1‑149 (MQ=255)                    aGCCGTTTCCCCCAGTCAGGTGGACGACTGACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCATGGATTGCAATTCCGGCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCaa                                                                                                                                  <  2:364802/149‑1 (MQ=255)                              cccAGTCAGGTGGACGACTGACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTACAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCg                                                                                                                        >  1:79505/1‑149 (MQ=255)                                     aGGTGGACGACTGACATAGTCCTCATCTCTGTCGCTGAAAGGATTTCGCAACACCTCATGAAGGAAGTGCAATTCCGTCATATAACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAAAGCGGGGTTaa                                                                                                                 >  1:40346/1‑149 (MQ=255)                                          gacgacTGACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCtt                                                                                                            <  1:487129/149‑1 (MQ=255)                                                 gACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCATAATGCAGGCGGTGCAAAGCCGTCATATCACCCTTTTCTGCCGCCTCAATCGCCCGTTGCGCCAACCAGGTGCCCGATCCCAGAGCGGGGGTCACGATTTGCATCa                                                                                                     >  2:229543/1‑149 (MQ=255)                                                        tcatcaTCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTg                                                                                              >  1:356115/1‑149 (MQ=255)                                                          atcatcTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCACTCGCCCGTTGCGCCAACCAGTTGCGCAATACCACAGCGGGGTTAACGCTTTGCATCAGTAGCTGAc                                                                                            >  2:347851/1‑149 (MQ=255)                                                          atcatcTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGAc                                                                                            >  1:257598/1‑149 (MQ=255)                                                          atcatcTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGAc                                                                                            >  1:35080/1‑149 (MQ=255)                                                                tctGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGGAATACCAGAGCGGGGTTAACGCTTTGCAt                                                                                                       >  2:99390/1‑132 (MQ=255)                                                                tctGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCAt                                                                                                       <  1:99390/132‑1 (MQ=255)                                                                          aaaGGATTTCGCAACGCCTCATGCAGGCGTTGCAATTCCGTCATAACACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCATAGCGGGGTTAACGCTTTGCATCAGTTGCTGCCGCTCACTATCGCTAAc                                                                            >  2:500756/1‑149 (MQ=255)                                                                                    gCAACTCCTCATGCAGGCGGTGCAATTCCGTCATCTCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCttgt                                                                  <  2:543453/149‑1 (MQ=255)                                                                                    gCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTCTTCTGCCGCTTCACTCGCCCGTTGCGCCAACCAGTTCCCCACTACCAAAGCGCGTTTAACGCTTGGCCTCAGTTGCGCACGCTCCCGATCGCTAACCTCACCttgt                                                                  >  2:96725/1‑149 (MQ=255)                                                                                     cAACGCCACATGCAGGCGGTGCAATTCCGTCATATACCCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCGGACCAGTTGCGCAATACCAGAGCAGGGCTAACTCTTCGAATGAGTTGCTGACACTCACTCACTCAAACCTCgagctctt                                                                 >  2:110765/1‑142 (MQ=255)                                                                                                      ggTGCAATTCCCTTATATGCCCCTTCTCTTCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCGGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATaa                                                <  1:229543/149‑1 (MQ=255)                                                                                                       gTGCAATTCCGTCATATCACCCTTTTCTGCCACTTCAATCGCCCGGTGCGCCAACCATTTGCGCAATTCCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGTACACTATCACTCACCTCCTCTTTTCGCAAACGCCCCCCAAAAc                                               >  2:459641/1‑149 (MQ=255)                                                                                                            aTTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACAAGTTGCGCAATACCAAAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCa                                          >  1:424174/1‑149 (MQ=255)                                                                                                             ttCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTTCGCCAACCAGTTGCACAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCaa                                         >  1:2477/1‑149 (MQ=255)                                                                                                                cGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAcc                                      >  1:231764/1‑149 (MQ=255)                                                                                                                   cATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGt                                   <  2:35080/149‑1 (MQ=255)                                                                                                                       tCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGtcatc                               <  2:451232/149‑1 (MQ=255)                                                                                                                         aCCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCACCCAGTTGCGCAATACCAAAGCGGAGATAACGCTTTGCATAAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGGAAACCAGTCATCaa                             >  1:159452/1‑149 (MQ=255)                                                                                                                            cTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATg                          <  1:496535/149‑1 (MQ=255)                                                                                                                             ttttCTGCCGCTTCAATCGCCCGTTGCGCCAACCATTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGTTGACGCTCACTATCGCTAATCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGc                         <  1:429591/149‑1 (MQ=255)                                                                                                                                  tGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTCCATCAGTTGCTGACGCTCACTATCGCTAACCTCCTCTTGTTGCAAACGCCCCCGATACCGGGACAACCAGTCATACAATGCCGCAc                    >  2:519008/1‑149 (MQ=255)                                                                                                                                    ccGCTTCAATCGCCCGTTGCGCCAACCAGCTACACATCACCAGATTGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTTGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGa                  <  1:12884/149‑1 (MQ=255)                                                                                                                                    ccGCTGAAATCGTCCGTTGCGCCAATCAGTTGCGCAATACCAGAGTGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACTTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGa                  <  2:77157/149‑1 (MQ=255)                                                                                                                                       cTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAc                                       >  2:121330/1‑125 (MQ=255)                                                                                                                                       cTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAc                                       <  1:121330/125‑1 (MQ=255)                                                                                                                                                    ttGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCAc  >  2:186361/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     ACTCGAGCAGCTGACTTCCAGCCGTTTACCCCAGTCAGGTGGACGACTGACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCAC  >  NC_000913_3_vch_tpiA/1789811‑1790106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.