New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 3255287	NA (NA)	6 (0.200)	4/276	4.1	NA	noncoding (71/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_vch_tpiA	= 3255319	NA (NA)					noncoding (103/103 nt)	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGC  >  NC_000913_3_vch_tpiA/3255139‑3255424                                                                                                                                                     |                                                                                                                                          ttGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAg                                                                                                                                           >  2:351767/1‑149 (MQ=255)        agcTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGAc                                                                                                                                    >  2:501689/1‑149 (MQ=255)            ggAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCTTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGa                                                                                                                                <  1:337202/149‑1 (MQ=255)                 cTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgcgc                                                                                                                           <  1:354185/149‑1 (MQ=255)                        cgcgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatc                                                                                                                    <  2:315082/149‑1 (MQ=255)                         gcgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcg                                                                                                                   <  1:351767/149‑1 (MQ=255)                          cgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCTTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgcatcgc                                                                                                                  <  1:162763/149‑1 (MQ=255)                                 tGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGc                                                                                                           >  2:515072/1‑149 (MQ=255)                                  gAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATTCGCCAGCATCGCATCCGGCa                                                                                                          >  1:238427/1‑149 (MQ=255)                                                cGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAAcc                                                                                            >  2:50198/1‑149 (MQ=255)                                                  aggaggAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCCGAATCGCATCCGGCACGATCCCCAAAACCTg                                                                                          <  2:141983/149‑1 (MQ=255)                                                                   tAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAAAAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTg                                                                         >  1:29912/1‑149 (MQ=255)                                                                       gACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAAAAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCCCATCCGGCACGATCCCCAAAACCTGGCCTTTATCTGGCCTTGCTCg                                                                     >  1:167830/1‑149 (MQ=255)                                                                             ttGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATaa                                                               <  2:432828/149‑1 (MQ=255)                                                                                 cGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGt                                                                                      >  1:183013/1‑122 (MQ=255)                                                                                 cGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAAtctc                                                           <  2:331017/149‑1 (MQ=255)                                                                                 cGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAAtctc                                                           >  1:292817/1‑149 (MQ=255)                                                                                 cGGATGCGGCGAAAACGCCTTATCCGGCCCACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGt                                                                                      <  2:183013/122‑1 (MQ=255)                                                                                   gATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGa                                                         <  2:280539/149‑1 (MQ=255)                                                                                   aaTGCTGCGAAAGCGCCTTATCCGGCCTACAAAATCCAAGAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGAGCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGa                                                         <  2:98511/148‑1 (MQ=255)                                                                                          cgAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTg                                                  <  1:496391/149‑1 (MQ=255)                                                                                            aaaaCGCCTTATCCGGCATACAAAATCCAACAACATTAACGAATTGAACAACCCGTAGACGGAACAAGATGCGACAGCATCGCATCCGGCAAGATCCCCAAAACCTGGCTTTTTTTTGACCTTGCTCACCATAATCTCGCTAATCGGcc                                                >  2:190538/1‑149 (MQ=255)                                                                                             aaaCGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCg                                               >  1:488993/1‑149 (MQ=255)                                                                                                  ccTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGATTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCg                                          >  2:69247/1‑149 (MQ=255)                                                                                                        ccGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtgct                                    <  1:501689/149‑1 (MQ=255)                                                                                                         cGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGAACAAGATACGACAGCATCGCATCCGGCACGAACCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTtgctg                                   >  1:138302/1‑149 (MQ=255)                                                                                                           gCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGACAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCGATAATCTCGATCATCTGCCGATCCGTTTGCTGCa                                 >  1:12718/1‑149 (MQ=255)                                                                                                                 aaaaTCCAACAACATTAACGAATTAAACAACCCGTAAACCGAACAAAATACGCCAGCATCGCATCCGGCACGATACCCAAAACCTGGCGTTTATCTGCCCTTACTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTCCATCGAAt                           >  1:13584/1‑149 (MQ=255)                                                                                                                   aaTCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATgg                         <  1:423717/149‑1 (MQ=255)                                                                                                                      ccAACAACGTTAACGAATTAAACAACGCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCtt                      <  2:441344/149‑1 (MQ=255)                                                                                                                      ccAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCtt                      <  1:50198/149‑1 (MQ=255)                                                                                                                        aacaacATTAACGAATTACACAACCCGTAGGCCGGACAAGATGCGCCAACATCGCATACAACACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGAATCGAATGGCtttc                    >  1:175894/1‑147 (MQ=255)                                                                                                                           aacaTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCACATAACGCTTTAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTaa                 >  1:404278/1‑149 (MQ=38)                                                                                                                              aTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGc                                                                             <  2:43603/86‑1 (MQ=255)                                                                                                                              aTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGc                                                                             >  1:43603/1‑86 (MQ=255)                                                                                                                                  aCGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCCGCATCGCATCCGGCACGATCACAAAAACCTGACGTTTATCTAGCCTTGCTCACCATAATCTCGATAATATGCCGATCCGATTGCTGCCTCGAATGGCTTACTCACGcccca          >  1:59141/1‑145 (MQ=255)                                                                                                                                  aCGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGACTTGCTAACGcacac          >  2:387857/1‑149 (MQ=255)                                                                                                                                  aCGAATTAAACAACCCGTAGGCCGGACAAGAAGCGCCAGCATCGCATGAGGCACGATCCCCAAAAACTGGCGTTTATCTGGCCTGGATAGACAGAATCTCGCTAATCTGCCCATCATTTGCCTGACTCGCATGGCCTCCTAACGcccac          >  2:294815/1‑149 (MQ=255)                                                                                                                                     aaTTAAACAACCCGTAGGCAGGACAAGATGCGCCAGCATCGCATACGGAACCATACCCGAAACGTGGCGTTTATGTGGCCTTGCTCGCCATAATCTGGGTAATCTGCCGATCAGGTTGCTGAATCACATGGCTTGATAACGcgaacaag       >  2:186838/1‑142 (MQ=255)                                                                                                                                         aaaCAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCTGATTCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTgg   <  1:5520/149‑1 (MQ=255)                                                                                                                                         aaaCAACCCGTAGGCCCGACAAGATGCGCCAGCATCGCATCCAGCACGATCCCCAAAACCTAGCGTTTCTCTGGCCTTGCTCGCCCTAATCTCGATACTCTCCCGATCCGTTTGCTTCATCGAACTGCTTTCTACCCCACCCATGTTgg   >  2:55686/1‑149 (MQ=255)                                                                                                                                          aacaacCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGc  >  2:386056/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                          TTGAGCGAGCTGGAAGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGATCCGTTTGCTGCATCGAATGGCTTGCTAACGCACACAGGTTGGC  >  NC_000913_3_vch_tpiA/3255139‑3255424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.