New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	508586 =	NA (NA)	5 (0.170)	5/274	3.6	12.2%	noncoding (5/236 nt)	REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences
	?	NC_000913_3_vch_tpiA	3512601 =	36 (1.200)					noncoding (3512601/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGGCGGCGGTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCT  >  NC_000913_3_vch_tpiA/508438‑508734                                                                                                                                                     |                                                                                                                                                     aGGCGGCGGTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAACAGGTCGCGGAAGGCCAAAACATCGCTTCATCTCGTAgg                                                                                                                                                      >  1:378013/1‑149 (MQ=255) aGGCGGCGGTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCATGCAAACAAGGTCGCCTAAGGCCAAAACATCGCTTCATCTCGTAgg                                                                                                                                                      >  2:357682/1‑149 (MQ=255)   gcggcgGTTGATCTTGTGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGcc                                                                                                                                                    <  2:168798/149‑1 (MQ=255)         gTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGCATTGGGACGGATTCAAACAGTGGCTGAATATTTGGCCCGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAACGCCAAAACATCCCTTCATCCCGTAGGCCGGATaa                                                                                                                                              >  2:505456/1‑149 (MQ=255)            gATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGc                                                                                                                                           >  1:167159/1‑149 (MQ=255)             aTCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCg                                                                                                                                          <  2:434753/149‑1 (MQ=255)                    ggAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACTTCTGGTCATCTCGTAGGCCGGATAAGGCGTTCAcgc                                                                                                                                   <  2:395214/149‑1 (MQ=255)                         ttGAAAACAACATGCGCACCCAGGAAGAATTGGGCCGGATTGAAACAGTGGCTGAATATTTAGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAAGCCAAAACATCGCTTCATCTCGTAGGCCGGATAGGGCGTTCACGCCgcat                                                                                                                              >  1:92001/1‑149 (MQ=255)                         ttGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCgcat                                                                                                                              >  1:345975/1‑149 (MQ=255)                            aaaaCAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACACCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCTTAGGCCGGATAAGGCGTTCACGCCgcatccg                                                                                                                           >  1:91461/1‑149 (MQ=255)                                 aacaTGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTTGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCgcatccggcctc                                                                                                                      >  2:230063/1‑149 (MQ=255)                                                gaagaaTTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCt                                                                                                       <  2:345975/149‑1 (MQ=255)                                                gaagaaTTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCt                                                                                                       >  2:189345/1‑149 (MQ=255)                                                        gggACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGGGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGAc                                                                                               <  2:314122/149‑1 (MQ=255)                                                        gggACGGATTGAAACAGTGGCTGAATATTGGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAATCATCGCTTTTTCTCGTTGGCTGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGAc                                                                                               <  1:18371/149‑1 (MQ=37)                                                          gACGGACTGAAACAGTTGCTGAATGGTGGGCACTCATTTAAGAGCGTCCAACAAAGGCCGCGTAATGCCAAAACATCGCTTCACTTCGTCGGCCGGATAAGGCTTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGTCGc                                                                                             <  2:437467/149‑1 (MQ=18)                                                                    aaCAGTGGCTGAATAGTTGGCTCGTCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCt                                                                                   <  2:384405/149‑1 (MQ=255)                                                                            gtGAATATTTGGCACGCCGTGAAGAGCTGGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGc                                                                           <  2:382694/148‑1 (MQ=255)                                                                             tGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGcc                                                                          >  1:395511/1‑149 (MQ=255)                                                                             tGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGcc                                                                          >  1:116712/1‑149 (MQ=255)                                                                                   tttGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACaaa                                                                    >  2:538102/1‑149 (MQ=255)                                                                                   ttgggCACGGAGTGAAGAGCGTGGAAAAAAGGTCGCGTAAGTCAAAAACCTCGCTTCCTCTCGTCGGCCGGATAAGGCGTTCACGCCGCATCCGGGATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACaaa                                                                    <  2:300448/146‑1 (MQ=18)                                                                                    ttGGCACGCCGTGAAGAGCGTGCAAAACAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAAc                                                                   <  2:330798/149‑1 (MQ=255)                                                                                        cACGCCGTGAAGGGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTtgt                                                               <  1:158791/149‑1 (MQ=255)                                                                                             cGTGAAGAGCGTGCAAAAAAGGTCACGTAAGGCCAAAACATCGCGTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCAATGCCTGATGCCACGCTTACCCGTCTTATCAGGCCTACACACTTTCGCCTg                                                          >  2:117081/1‑149 (MQ=21)                                                                                                gAAGAGCTTGCAAAAAAGGGCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGGCGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAAc                                                       <  2:388772/149‑1 (MQ=255)                                                                                                         gCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCATCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCg                                              <  1:191995/149‑1 (MQ=255)                                                                                                            aaaaaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGAt                                                                                                    <  2:256232/92‑1 (MQ=255)                                                                                                            aaaaaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGAt                                                                                                    >  1:256232/1‑92 (MQ=255)                                                                                                            aaaaaGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACAATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGAt                                           >  2:474086/1‑149 (MQ=255)                                                                                                                 gggcgcgTAAGGCCAAAGCATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATGGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGc                                      <  1:505456/146‑1 (MQ=255)                                                                                                                 gggcgcgGAAGGCCAAAACATCGCTTCATCGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAACCTTGTGCCTGAACCGTAGGCCGGATAAGGc                                      <  2:172890/146‑1 (MQ=255)                                                                                                                  gTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCg                                     >  2:477097/1‑149 (MQ=255)                                                                                                                  gTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCAGCATCCGAGCACCATTGCCTGATGCGACACTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCg                                     >  1:182140/1‑149 (MQ=255)                                                                                                                         aaGGCGAGAACATCGCTTTTTCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGTTGCGACGCTTACCCGTCTTATCAGGCCTATAACCTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTAcgc                              <  2:169451/149‑1 (MQ=14)                                                                                                                             ccAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCgca                          >  2:288442/1‑149 (MQ=255)                                                                                                                               aaaaCATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGACATCCGAGCACCATTTCCTTATGCGACGCTTACCCGTCTTATCAGGCCTACGAACTTGTGCCTGAACCGTAGGCCGGATGAGGGGTTTACGCCgcatc                        >  1:13495/1‑149 (MQ=17)                                                                                                                                         ttCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGa              <  1:538102/149‑1 (MQ=255)                                                                                                                                             tcccGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCAc          <  1:203596/146‑1 (MQ=255)                                                                                                                                                 gTAGGCCGGATAGGGCGTGACCGCCGCATCCGGCATCCGGGCACCATTGTCTGATGCGGCGCTTACCCGGCTTATCAGGCCTACAATCTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGGGCACCAtt      <  2:481370/149‑1 (MQ=14)                                                                                                                                                     gCCGTATAAGGCGTCCACGCCGCATCCGGCATCCGATCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCt  <  2:116712/149‑1 (MQ=255)                                                                                                                                                     gCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCt  >  1:319848/1‑149 (MQ=255)                                                                                                                                                     gCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGAGAGGATGCCGCATCCGGCATCCGAGCACCATTGCCt  <  2:395511/149‑1 (MQ=17)                                                                                                                                                     gCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCAACTTATCAGGCCTACAAACTTATACATGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACCCAGCACCATTGCCt  >  1:527152/1‑149 (MQ=14)                                                                                                                                                     |                                                                                                                                                     AGGCGGCGGTTGATCTTTGGGAAGTTGAAAACAACATGCGCACCCAGGAAGAATTGGGACGGATTGAAACAGTGGCTGAATATTTGGCACGCCGTGAAGAGCGTGCAAAAAAGGTCGCGTAAGGCCAAAACATCGCTTCATCTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTTACCCGTCTTATCAGGCCTACAAACTTGTGCCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCT  >  NC_000913_3_vch_tpiA/508438‑508734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.