New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 944911	34 (1.080)	4 (0.130)	4/272	4.0	10.5%	noncoding (944911/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 944917	36 (1.210)					noncoding (944917/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAAAGGTTATCAGCCTGCGGTTCCGCTACTTTCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGCACGCCACGCCGAACCA  >  NC_000913_3_vch_tpiA/944769‑945065                                                                                                                                                     |                                                                                                                                                     tAAAAGGTTATCAGCGTGCGGTTCCGCTACTTTCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCgg                                                                                                                                                      >  2:391425/1‑149 (MQ=255)           tCAGCCTGCGGTTCCGCTACTTTCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCACGCTAATCATAACAACCGGGGTTTCGGCCCCGGGtct                                                                                                                                            >  2:262614/1‑149 (MQ=255)                     gTTCCGCTACTTTCTGTATCATTCATTCTCCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTc                                                                                                                                  <  1:474198/149‑1 (MQ=255)                               tttCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCCTCGTTa                                                                                                                        >  2:243391/1‑149 (MQ=255)                               tttCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGACGTATTCTATGATTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTa                                                                                                                        >  1:172529/1‑149 (MQ=255)                                 tctcTATCATTCATTCTCCTTATTACAGGGGAAGTAATCGGTCGGTGTTTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCTTTAAc                                                                                                                      >  2:547042/1‑149 (MQ=255)                                 tCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAAc                                                                                                                      >  2:151218/1‑149 (MQ=255)                                     tagcattcattCTTCTTCTGGCAGGGGCATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCTAGCTAATCATAACATCCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACgtgt                                                                                                                  <  1:2892/146‑1 (MQ=255)                                       gcattcattCTGCGTTTTGTAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCa                                                                                                                <  2:85401/148‑1 (MQ=255)                                          ttcattcTGCTTCTGGCAGGGGAATTAATCGGTCGCGTCGTATTCGATGGTTTGCATATGACCGTGGGGATGGCCGTTGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATaa                                                                                                             <  1:68279/149‑1 (MQ=255)                                             attcTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAAAAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAAccg                                                                                                          >  2:460639/1‑147 (MQ=255)                                                   cTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGATCGTGGGTATGGCCGTCGTAAGCTAATCTTAACATCCTGGTTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGtcatc                                                                                                    <  1:243391/149‑1 (MQ=255)                                                    ttCTGGCAGGGGAATTAATCGGTCGCGGCGGATTGGAGGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATTACTGGttctca                                                                                                   >  2:534551/1‑144 (MQ=255)                                                    ttCTGGCAGGGGAAGTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGGTGGCCGTCGCGAGCTAATCATACCAACCAGGGCTTCCACCCCGCATCGCTGTTATTTATTCTTCGTTACCGTTCCATAACTAGtcatcc                                                                                                   >  2:29899/1‑148 (MQ=255)                                                                         gTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAAtgt                                                                              >  2:307649/1‑149 (MQ=255)                                                                          tCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGTCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAAtgtg                                                                             >  2:213072/1‑149 (MQ=255)                                                                          tCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGTCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAAtgtg                                                                             >  2:213084/1‑149 (MQ=255)                                                                          tCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTGCTCTTTTATTTCTGCTTCGTTAACGTGACATAACTGGTCATCAAATTACGATAATCAGGAAtgtg                                                                             <  1:519563/149‑1 (MQ=255)                                                                            gcggcgTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGt                                                                           <  2:228214/149‑1 (MQ=255)                                                                               gcgTATTCTATGGTTTGCATATGACCGTGGGGATGGTCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTag                                                                        <  1:213084/149‑1 (MQ=255)                                                                               gcgTATTCTATGGTTTGCATATGACCGTGGGGATGGTCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTag                                                                        <  1:213072/149‑1 (MQ=255)                                                                                     tCTATGATTAGCATATGACCGTGGGGATGGCCGTGGCAAGCTAATCATAACAAACGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCTAAACTGGTCATCAAATTACGATAAACAGGAATGTGGTTATATaaca                                                                  >  2:147294/1‑149 (MQ=255)                                                                                           gTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCg                                                            >  1:181071/1‑149 (MQ=255)                                                                                            tttGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGc                                                           <  1:34140/149‑1 (MQ=255)                                                                                                 atatGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTCTTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGcacgcc                                                      >  2:234129/1‑144 (MQ=255)                                                                                                 atatGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCAACCCCGATACACTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTc                                                      >  1:707/1‑149 (MQ=255)                                                                                                        cGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAat                                               >  1:159809/1‑149 (MQ=255)                                                                                                              gATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTTGGCTCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCAtt                                         <  1:272238/149‑1 (MQ=255)                                                                                                                  gCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACTAGAATTAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGc                                     <  1:521609/149‑1 (MQ=255)                                                                                                                              tAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTAATCAAATTACGATAATCAGGAATGTGGTTAGAGAAAAACGTCGCCAGTCCTTAAATATCATAACACCAGTGGCGAtac                         >  1:165563/1‑147 (MQ=255)                                                                                                                                  cgtAACAACCGGGGTTCCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGCTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGTCAGTCGCGATGCAGCt                     <  2:550978/147‑1 (MQ=255)                                                                                                                                      acaacCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGca                 <  1:151218/149‑1 (MQ=255)                                                                                                                                          ccGGGGTTTCGGGCCCGGTTCTCTTTTGTTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGTAATGTGGTTAGATAACAACGTCGCTAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGcacgcc             <  1:184131/149‑1 (MQ=255)                                                                                                                                              gttttCGGCCCCGGTTTTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGcacgccacgc         <  1:370513/147‑1 (MQ=255)                                                                                                                                                tttCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAAATACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGCACGCCccgccg       >  1:4968/1‑149 (MQ=255)                                                                                                                                                    ggCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGCACGCCACGCCGAAcc   <  1:312474/149‑1 (MQ=255)                                                                                                                                                     gCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGCACGCCACGCCGAACCa  <  2:181071/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TAAAAGGTTATCAGCCTGCGGTTCCGCTACTTTCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGCACGCCACGCCGAACCA  >  NC_000913_3_vch_tpiA/944769‑945065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.