New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1667396 =	34 (1.080)	4 (0.130)	4/278	4.1	10.7%	noncoding (1667396/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1667427 =	34 (1.110)					noncoding (1667427/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGCCAATCAGTATTTTTTGTGGGTTAAATAAA  >  NC_000913_3_vch_tpiA/1667279‑1667572                                                                                                                                                     |                                                                                                                                                  tcaaaGTTATGCTTTCCTAGCCCAAATTGAAATAGCGCAGAGGTTGGTAGAACAGTTAAAAAACGTTAACCCTGCAACAGACGAATCAACAAAAAACCGTTATACATCGCGTCTTTTACCAATGCAGAGCCTGCCATCGTGCCCTGGtt                                                                                                                                                   >  2:543155/4‑149 (MQ=255) tCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACTGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGtt                                                                                                                                                   <  1:143240/149‑1 (MQ=255)            cgttCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAg                                                                                                                                        <  1:165483/147‑1 (MQ=255)            cTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAg                                                                                                                                        <  1:479487/149‑1 (MQ=255)            cTTTCCTGGCCCAAATTGAGATAGCGCAAATCTTAATATAACAGTGAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGATTCGTTATACATCGTGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAg                                                                                                                                        <  1:12962/149‑1 (MQ=255)                     cccAAATTTAAATAGCGCAAATTTTGGTAGAATACTTATAACGCTTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCaa                                                                                                                               <  1:428791/149‑1 (MQ=255)                      gcagatagagaTAGCGCAAATGTTGGTAGAAGAGTTAAAAAATGTTAACCCTGCAATAGACGAATTAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCATCTCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTGAAc                                                                                                                              <  2:59656/142‑1 (MQ=255)                                     gcAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAAAAAAAAAAAGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCGCTGGTAAGAAAACTGAGTACTCTCAAGGCTGATGTGCTGAcg                                                                                                               >  1:47118/1‑148 (MQ=255)                                           tttGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGc                                                                                                         <  1:530307/149‑1 (MQ=255)                                                  gAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGAGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAgg                                                                                                  >  1:484444/1‑149 (MQ=255)                                                        ttAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCctgc                                                                                            >  2:346608/1‑149 (MQ=255)                                                        ttAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCctgc                                                                                            >  1:342862/1‑149 (MQ=255)                                                            aaaaTGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGAc                                                                                        >  1:361596/1‑149 (MQ=255)                                                                tGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGAt                                                                                    <  1:425320/149‑1 (MQ=255)                                                                   tAACCCTGCAAAAGTGCAATCAACAAAGCACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGTTGACGGATGCt                                                                                 <  1:346386/149‑1 (MQ=255)                                                                    aaCCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTACCATCGTGCCCTGATTAGAAAACTGAATACTCTCAACGCTGATCTGCTGACTATACGCAGGAAGGGCCAGCTGACGGATGCTg                                                                                >  1:232700/1‑149 (MQ=255)                                                                           tgaCAGACGAATAAACCAAGAACCGTTATACATCGCGTCTTTTACCAGGGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGTGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGTGCCTGCTGACGGATGCTGTCTgaga                                                                         <  2:200838/147‑1 (MQ=255)                                                                            aaCAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGAt                                                                        >  1:538447/1‑149 (MQ=255)                                                                               aGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGAAGAGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGAATAGACACAGGAAGGGCCTACTGACGGATATTGTCTGAGAGGAc                                                                     >  1:348533/1‑149 (MQ=255)                                                                                   gAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCggg                                                                 >  1:321361/1‑149 (MQ=255)                                                                                   gAATCAACAAAGAACCGTTATACATCGCATCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCggg                                                                 >  2:534889/1‑149 (MQ=255)                                                                                         acaaAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTTAACGCTGATGTGGTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAgg                                                           <  1:100645/149‑1 (MQ=255)                                                                                                        aCATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTCACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTa                                            >  1:24184/1‑149 (MQ=255)                                                                                                                     tACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTATAAAACTGAGTCCTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGc                               >  1:188171/1‑149 (MQ=255)                                                                                                                       ccAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGTAGGAAGGGCCTGCTGACGGATGCTGTTTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGCCa                             <  1:170648/149‑1 (MQ=255)                                                                                                                         aGTGCAGCGCCTGCCATCGTGCCCTGGTTAGATAACAGAACACCCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTTTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGCCAAt                           <  1:12887/149‑1 (MQ=255)                                                                                                                          gTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGCCAATc                          >  1:136131/1‑149 (MQ=255)                                                                                                                                      tcATCGGGCCCGGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGCCAATCAGTATTTTTtgt              <  2:47118/148‑1 (MQ=255)                                                                                                                                        agcGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGCCAATCTGTATTTTTTGTgg            <  2:188171/147‑1 (MQ=255)                                                                                                                                         tCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATc                                                      <  2:26020/106‑1 (MQ=255)                                                                                                                                         tCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATc                                                      <  2:298989/106‑1 (MQ=255)                                                                                                                                         tCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATc                                                      >  1:26020/1‑106 (MQ=255)                                                                                                                                         tCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATc                                                      >  1:298989/1‑106 (MQ=255)                                                                                                                                           gTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGCCAATCAGTATTTTTTGTGGGtt         >  2:174249/1‑149 (MQ=255)                                                                                                                                                 tGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGCCAATCAGTATTTTTTGTGGGTtaaataa   <  1:508774/149‑1 (MQ=255)                                                                                                                                                  ggTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGCCAATCAGTATTTTTTGTGGGTtaaataaa  <  1:346608/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACAAAGAACCGTTATACATCGCGTCTTTTACCAGTGCAGCGCCTGCCATCGTGCCCTGGTTAGAAAACTGAGTACTCTCAACGCTGATGTGCTGACTATACGCAGGAAGGGCCTGCTGACGGATGCTGTCTGAGATGACCGGGAAGAGGATATCTGCCGCTTTACTTAACGGTGAGCCAATCAGTATTTTTTGTGGGTTAAATAAA  >  NC_000913_3_vch_tpiA/1667279‑1667572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.