New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2041152 =	NA (NA)	4 (0.130)	4/272	4.0	NA	noncoding (1/34 nt)	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_vch_tpiA	2041182 =	NA (NA)					noncoding (31/34 nt)	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTATATGTTAC  >  NC_000913_3_vch_tpiA/2041036‑2041328                                                                                                                                                   |                                                                                                                                                    tGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATa                                                                                                                                                   >  1:248116/1‑149 (MQ=255) tGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCAGATGGATTGCGAGCGCCCCATCCGGtata                                                                                                                                                   >  2:553789/1‑149 (MQ=255)  gCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATac                                                                                                                                                  >  1:496413/1‑149 (MQ=255)    ttttAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGTTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCCTTATCCGTGCCGGTAGTGGCGCTAGCGCCCTATCCGGCATacac                                                                                                                                                >  1:516636/1‑149 (MQ=255)      ttAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCTTATTGCCGACAAAGAACGCGTTATCGCTGCCGGATTTGGCGCGAGCGCCCTATCCGGCATACACAg                                                                                                                                              <  2:524409/149‑1 (MQ=255)           cTTACGGTATAAGAAGTTGCGTTCCCTGTTTAACCGGTTACGCAATCAGGTTCACAAAAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGc                                                                                                                                         >  1:524509/1‑149 (MQ=255)                  tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCAGGCATACACAGATCGCATCAGGt                                                                                                                                  >  1:66028/1‑149 (MQ=255)                     aagaagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTAt                                                                                                                               <  2:307739/149‑1 (MQ=255)                               gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                                                                                                     >  1:249300/1‑149 (MQ=255)                                    cTTTATAATCTGCTATGCAATCAGGTTCACATCAAATTATCTGTATAACTTCATATTGCCGACATAGTACGCGTTACCCCGGCCGAATGTGGCTCCACCGTCATTTCCGGCACCCACACCTCGCATCAGGTTATGTTTCGTTTGtcatc                                                                                                                <  2:172858/149‑1 (MQ=255)                                       tttAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAc                                                                                                             <  2:249300/149‑1 (MQ=255)                                                 tACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCAc                                                                                                   <  1:553789/149‑1 (MQ=255)                                                                      aaTTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGACACGAGCGCCCTATCCGGCATACACAGATAGCATCAGGTTAAGTTTCGTTAGTCATCCACCTCAAAT‑ACCAACCATCATTTCTTTTACTTc                                                                             >  2:380322/1‑149 (MQ=255)                                                                              gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCTCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAagat                                                                     <  1:97008/149‑1 (MQ=255)                                                                              gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAagat                                                                     <  1:97732/149‑1 (MQ=255)                                                                                  aaCTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGTGCTATATGACTTATTTATCGGTATCTGCATATTATGGTTCGTTTGTGCTGAGCTGTAAATCACGAC‑AATACTTTATTTTATTTCAATAagatatat                                                                 >  1:545023/1‑149 (MQ=255)                                                                                    cTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGTCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AACAATTTATTTAATTTGAATAagaaaattag                                                               >  2:244881/1‑142 (MQ=255)                                                                                     ttCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAg                                                              >  1:86627/1‑149 (MQ=255)                                                                                     ttCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGACATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAg                                                              >  1:512724/1‑149 (MQ=255)                                                                                       cATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTa                                                            <  2:248116/149‑1 (MQ=255)                                                                                         tatTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAACTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGa                                                          >  1:535943/1‑149 (MQ=255)                                                                                                       tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATCATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCAt                                            >  2:489120/1‑149 (MQ=255)                                                                                                        aCGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATg                                           >  2:299522/1‑149 (MQ=255)                                                                                                             ttATCCCTGCCGGATGTGGCGCCACCGCCATATCCGGCATACACCGATCGCATCATGTTATGTTTCGTTTGTCATCAATCTCAAATTACCAA‑AATAATTTATTTTATTTCAATAAGATAGAGAAGTAGAACTGAGAAAGCCATGCtctc                                      <  1:77537/149‑1 (MQ=255)                                                                                                                tCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGtt                                   <  1:299522/149‑1 (MQ=255)                                                                                                                  ccTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTc                                 <  2:524509/149‑1 (MQ=255)                                                                                                                   cTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTcc                                >  2:272902/1‑149 (MQ=255)                                                                                                                    tGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAAGTTATGTTTCGTTTGTCATCAACCTCAAACCACAAA‑CATAATTTATTTTATTTCAATCAGATAGTTAAGTAGAATTGAGGAAGTCATTCTCTCGTTTCCt                               <  2:187114/149‑1 (MQ=255)                                                                                                                    tGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCAACAAGTAATGAATCATTTATCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCt                               >  1:61182/1‑149 (MQ=255)                                                                                                                        ggATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAaga                           <  1:272902/149‑1 (MQ=255)                                                                                                                               gcgcGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGttgttg                    >  1:549089/1‑149 (MQ=255)                                                                                                                                   tcgcgcCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCAtt                <  2:61182/147‑1 (MQ=255)                                                                                                                                      cgcCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTg             <  2:86627/149‑1 (MQ=255)                                                                                                                                            atcagtcATCCACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACAAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTatat       <  1:289776/143‑1 (MQ=255)                                                                                                                                                ggCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTATATGTTa   <  2:481821/149‑1 (MQ=255)                                                                                                                                                 gCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTATATGTTAc  <  1:138817/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAA‑AATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTATATGTTAC  >  NC_000913_3_vch_tpiA/2041036‑2041328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.