| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 2549534 = | 45 (1.420) | 4 (0.130) | 4/274 | 4.1 | 8.5% | noncoding (69/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 2549564 = | 43 (1.430) | noncoding (2549564/4641682 nt) | repeat_region | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTGGTGA > NC_000913_3_vch_tpiA/2549419‑2549710 | tcagtAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCgtgt > 1:304817/1‑149 (MQ=255) tggctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCACACAATATATTGAATTAGCACGATTTCG‑TCGGCCGCATACCGCGTTACCGCCGCATCCGCCGTGTACACCGCGCaact > 2:399503/1‑146 (MQ=21) ctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACACTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGt > 1:422343/1‑149 (MQ=255) tggTCTGAGAGTGCTGACAAACGCAAAAATGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTc > 1:525689/1‑149 (MQ=255) tCTGAGAGTGCTGACAAACGCAAAACTGCTTTATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGTCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTcaac < 1:474019/149‑1 (MQ=255) tGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCCCATCCGGCATGTACAACGCGCACCTGGTcaacaa > 2:347060/1‑149 (MQ=255) gagaGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAAt > 2:424739/1‑149 (MQ=255) agagTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATc < 1:537161/149‑1 (MQ=255) gTGCGGACAAACGCAAAACTGCCTTATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGa < 2:150456/149‑1 (MQ=255) tGACCAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAACCCACAATATAATGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTCGTCAACAATCTGAGGcc > 1:415986/1‑149 (MQ=18) tGACAAACGCAAAACTACCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAATGCGTTCAAGCCGCATCCGGCCTGTCAAACGACCCCTTCGTCAACACTCTGAGGcc > 2:238621/1‑149 (MQ=18) aaaCGCAAAACTGCCTGATGCGCTACGCGTATCAGGCCTACGTAGAGCCAACAATATATTGAATTAAAAC‑ACTCCGTTATTTCTGATAAGGCGTTCCCGCCGACTCGGGGTTGTCCAACGCGCACTTTGTAAACAATCTGAGGCgagtg > 2:137275/1‑148 (MQ=12) aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCA‑TAGACCGGATAAGGCGTTCACAAAGAAACGGAAGTGTACAACGCGCACTTGGACAACAATCTGAGGCcagtcag > 1:349765/1‑149 (MQ=21) aaaaCTGCTTGATGCTCTACGCTTATTAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAAt < 1:136332/149‑1 (MQ=255) aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGGGCACTTGGGCAACACTCTGAGGCCAGTCGGTCATGtt > 2:36730/1‑149 (MQ=21) ccTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTACACGCCGGATGCGGCGTGAAc > 2:538330/1‑103 (MQ=21) ccTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTACACGCCGGATGCGGCGTGAAc < 1:538330/103‑1 (MQ=21) aTGCGCTACGCTTATCCGGCGTACGTGGAGCCCATAATGTATTGAATTAGCTCCATTGCG‑TAGGCCGGATAAGGCGTTCACGCCTTATCCTGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTg < 2:253329/149‑1 (MQ=37) gcTACGCTTATCAGGCCTACGTGGAGCCGACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAATAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCt < 2:92406/149‑1 (MQ=255) tACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCAGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCAAGTCAGTAATGTTACTGCCTGGACtat > 1:68239/1‑147 (MQ=255) ggCTTCTCAGGTCTCACTGGAGACCACAATATCTTGATTTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATTCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCATTCAGTAATGTTACTGCCTGGCCTTTaa < 2:28017/148‑1 (MQ=25) gCTTATCAGGCCTACGTGGAGCCTACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAAt < 1:495847/149‑1 (MQ=255) gCTTATCAGGCCTACGTGGAGCCCCCACTATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAAt > 1:92014/1‑149 (MQ=255) gCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAAGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAAt > 1:315698/1‑149 (MQ=255) aTCAGGCCTACGTGGATCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAAt < 2:304817/149‑1 (MQ=255) aTCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAAt < 2:525689/149‑1 (MQ=255) cAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGa < 2:230971/149‑1 (MQ=255) cgCCTACGTAGAGCCCACAATTTAGTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAAt < 1:36730/148‑1 (MQ=255) gtACTTGGAGCCCACTATATATTGCAGTACGACGATTTCG‑TAGGTCGGATAAGGTCTTCACGCCGCATCCGGCGTACACAACGCTCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCTTTTAATCAATGAATCAg < 2:253445/148‑1 (MQ=255) tACGTGGATCCTACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGACTGGCCTTTACTCAATGAATCAGa > 2:50844/1‑149 (MQ=255) gTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAAc < 1:424739/149‑1 (MQ=255) cacaATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAg < 2:203509/149‑1 (MQ=255) atTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCa > 1:536304/1‑149 (MQ=255) ttGAATTAGCACGAGTGCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCaa < 2:339968/149‑1 (MQ=255) cACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCAt > 1:295468/1‑137 (MQ=255) cACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCAt < 2:295468/137‑1 (MQ=255) aCGATTTCG‑TAGGCCGGATAAGGCGTTCACGTTGCATCTGGTGTGTAAAAAGAGAATTTGGTAAAAAATTTGAGGAAAGTAAGTAATGTTAATGAATGGCATTTAATCAATGAATAAGAAACGCTTAAAGCGCAATCAACTTGTACAGc > 1:200269/1‑149 (MQ=255) g‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGCCGGTGc > 1:424314/1‑149 (MQ=255) tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAAGCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAACGCCATCAACTTGTCCAGCGACAGTGCg > 2:17413/1‑149 (MQ=255) ggCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTAAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGaa > 1:274271/1‑149 (MQ=255) aTAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCACCAACTTGTCCAGCGACGGTGCGCAataata > 2:143660/1‑149 (MQ=255) gCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGACAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACACTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAgccgc > 1:261865/1‑149 (MQ=255) gccgcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCAGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAACCGCCCGTTAcc > 2:60019/1‑149 (MQ=255) tCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTg < 1:529668/149‑1 (MQ=255) ccGGCGTGGACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGATTCGTTTTTAACTCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTgg < 1:354709/149‑1 (MQ=255) gCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCCATGCATCAGAAACGCTTACAGCACCATCAACTTGACCAGCGGCGGTGCGAAATAATAGCCTCCGGTTACCCGTCTGGTgc > 2:242029/1‑148 (MQ=255) | TCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCG‑TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAGCCGCCGGTTACCGGTTTGGTGA > NC_000913_3_vch_tpiA/2549419‑2549710 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |