Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_vch_tpiA	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_vch_tpiA	1978503–1979270	1979278	9–776	37 [0]	[0] 36	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 1978502	0 (0.000)	35 (1.170)	30/272	0.1	100%	noncoding (1978502/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1979279 =	0 (0.000)					noncoding (1979279/4641682 nt)	repeat_region	repeat region

GCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTA  >  NC_000913_3_vch_tpiA/1979147‑1979420                                                                                                                                     |                                                                                                                                              acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                                                               >  2:78685‑M2/133‑149 (MQ=255)     atctaagatttttcctaaatcgacgcaaccgtactcgttactacacgcacatacatcggaggggggctgctattttcaataatgctttatgtatatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtttt                                                                                                                           <  1:47037‑M2/21‑1 (MQ=255)       ctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcatacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                         <  1:248299‑M2/23‑1 (MQ=255)       ctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                         <  2:128167‑M2/23‑1 (MQ=255)        taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacataaaactctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                                                                        <  1:137613‑M2/24‑1 (MQ=255)        taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                                                                        >  2:215209‑M2/126‑149 (MQ=255)                             gcaactttactcggcactacacgcacaaacaacggagaggagctgcgattttcaataatgcgtaatgcagatcacacaaaacactcaattacataacacaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                   <  2:229893‑M2/45‑1 (MQ=255)                               aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATGTCAGTCTGTTAAAAAGt                                                                                                 >  1:537344‑M2/103‑149 (MQ=255)                                  tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                              >  2:195959‑M2/100‑149 (MQ=255)                                    tactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttgacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                            <  1:553401‑M2/52‑1 (MQ=255)                                       tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                         >  1:272424‑M2/95‑149 (MQ=255)                                            actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                    >  2:202659‑M2/90‑149 (MQ=255)                                              tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAATTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                                                                  >  1:458812‑M2/88‑149 (MQ=255)                                              tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcaaatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTATGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag                                                                                  >  1:8201‑M2/88‑149 (MQ=255)                                                 acgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                               <  2:447017‑M2/65‑1 (MQ=255)                                                       atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTTTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                         >  2:350751‑M2/79‑149 (MQ=255)                                                            acggaggggggctgcgattttcaataatgcgtaatgcatatcacaaaaaaaactccattaattaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTGAATCTGTTAAAAAGTTATTAGCTACTCTAGCATACAATAATGaa                                                                    >  1:191969‑M2/74‑149 (MQ=255)                                                             cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                   <  1:46507‑M2/77‑1 (MQ=255)                                                             cggaggggggctgcgattgtcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                   >  2:341582‑M2/73‑149 (MQ=255)                                                                aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTAAATCTGTTAAAAAGATTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                                >  2:57799‑M2/70‑149 (MQ=255)                                                                        tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAATCCATGTAGGTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc                                                        >  1:404315‑M2/62‑149 (MQ=255)                                                                         gcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg                                                       >  2:188073‑M2/61‑149 (MQ=255)                                                                            attttcaataatgcgtgatggagatcacacaaaacactcaattactgaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTATAGAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAGAAGCGaaa                                                    <  2:327115‑M2/92‑1 (MQ=255)                                                                                  aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGACTAATCGAAATGGGAt                                              >  2:45588‑M2/52‑149 (MQ=255)                                                                                  aataatgcgcgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTATTACTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAt                                              >  1:42389‑M2/52‑149 (MQ=255)                                                                                   ataattcgatatggagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg                                             <  2:102844‑M2/99‑1 (MQ=255)                                                                                   ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGATATGGGTGTATTTCAATCTGTTAAAAAGTTTTTCACTACCCTGGCGAGAAAAAATGAAAGAAGAATAATCgaaatgcgctg                                             >  2:377660‑M2/51‑144 (MQ=255)                                                                                         cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcgc                                       <  1:327328‑M2/105‑1 (MQ=255)                                                                                                 agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGATGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACACTcat                               >  1:122589‑M2/37‑148 (MQ=255)                                                                                                  tataacagaaaacacttagttatgtaacataaatgTATAAGTCATAATTGTGTTTTGGGTGTATTTCAATCTTTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                              <  2:25203‑M2/114‑1 (MQ=255)                                                                                                    tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTAAAGAt                            >  2:299952‑M2/34‑149 (MQ=255)                                                                                                      acacaaaacactcaatgacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAGTTCTATCTGTTAAAAAGGTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAACAtac                          <  2:510842‑M2/118‑2 (MQ=255)                                                                                                          aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                      >  2:159489‑M2/28‑149 (MQ=255)                                                                                                            aaccctcaattactaaacataaattTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc                    <  2:42389‑M2/124‑1 (MQ=255)                                                                                                            aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc                    <  1:202659‑M2/124‑1 (MQ=255)                                                                                                                              ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCta  <  1:159489‑M2/142‑1 (MQ=255)                                                                                                                                     |                                                                                                                                              GCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTA  >  NC_000913_3_vch_tpiA/1979147‑1979420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑