| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913_3_vch_tpiA | 2,679,525 | G→T | A1074D (GCT→GAT) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_vch_tpiA | 2,679,525 | 0 | G | T | 100.0% | 43.5 / NA | 18 | A1074D (GCT→GAT) | yphG | DUF4380 domain‑containing TPR repeat protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (8/10); total (8/10) | |||||||||||
TAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGA > NC_000913_3_vch_tpiA/2679379‑2679655 | tAGGGTTTTATTTAACAACGGCTTATTCTAATTATGTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTTATAGGGTTTAGTGATCGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATcc < 1:150927/149‑1 (MQ=255) attaACAACGGCTTATTCTAATTATTTTGGGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCg > 2:500316/1‑149 (MQ=255) cGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAAt < 1:349761/149‑1 (MQ=255) gCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCACTCCGGATTAATCGCCTTCatcta > 2:404290/1‑145 (MQ=255) ttgaTTCTAACTCTGGTGTGTTGGGCGGCGGTGCGTGCGGTGCAAAGGTTACAGTTACTAGAGTTTGTTAAGCGCGGTTAAAAATAAAAGTTCTCACGGTGGTGAATAATGCCGCTTTCGGTCAATCCGGATTAAACGCCGTCAATTCa < 2:68422/146‑1 (MQ=255) ttAATTATTTTGTGATGAGCGGTAGCACGTGACGATCAACTATTACAGTTTATAGTGTTTAGTGGACGCGGTTAAAAATAAGAGGCATCACGGTGGTGAATACTGCCGCTTTCGGCCAATCCAGATTAAGCGCCGTCAATTCAGCACGa < 2:258721/148‑1 (MQ=255) gCGGAAGCGCGTGCAGCGAAAAGATTAAGGTTATGAGGGCTTAGTGAATGCGGGTAAAAGTGAGAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACGCATATTACGCa > 2:408962/1‑149 (MQ=255) tAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCAAGCATCGcca > 1:344767/1‑149 (MQ=255) gAACGCGGTTAAAAATAAAACACATCCTGCTTGTGAAAAATCCCGCGTACGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGCCTCATATTGCGCAACCTCCCCTCGTCCCGCGGACGCCAGCATCGCCACCGTCAGGCAt > 2:200537/1‑149 (MQ=255) aCGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCACCCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCAttt < 1:500316/149‑1 (MQ=255) ttAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCttt < 1:447893/149‑1 (MQ=255) tCACGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCTCGGACGCCAGCATCGCCACCATCAGTCATTTTTCTTTATGCTGCTGTTGTaaa < 1:185998/149‑1 (MQ=255) aCGGTGGTGAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATc < 1:445142/149‑1 (MQ=255) tgAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGACTTTTTCTTTATGCTGCTGTTGTAAATCGCCCTAc > 2:270290/1‑149 (MQ=255) gAATAATGCCGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCCTCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATAcc > 2:310164/1‑148 (MQ=255) aatGACGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGTCTCATATTGCGCAACCTCCCCGAGTCCCGCGGACTCTAGCATTGTCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGa < 1:38930/149‑1 (MQ=255) cGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTa < 2:336402/115‑1 (MQ=255) cGCTTTCGGCCAATCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTa > 1:336402/1‑115 (MQ=255) | TAGGGTTTTTATTAACAACGGCTTATTCTAATTATTTTGTGATGAGCGGCAGCGCGTGCCGCTCAAATATTACAGTTAATAGGGTTTAGTGAACGCGGTTAAAAATAAAAGGCATCACGGTGGTGAATAATGCCGCTTTCGGCCAAGCCGGATTAATCGCCGTCAATTCAGCGCGAGCAGACTCATATTGCGCAACCTCCCCGAGTCCCGCGGACGCCAGCATCGCCACCATCAGGCATTTTTCTTTATGCTGCTGTTGTAAATCGCCATACAGCGA > NC_000913_3_vch_tpiA/2679379‑2679655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |