New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 1299498	0 (0.000)	42 (1.340)	39/274	0.0	100%	noncoding (1299498/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1300698 =	0 (0.000)					noncoding (1300698/4641682 nt)	repeat_region	repeat region

TCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCT  >  NC_000913_3_vch_tpiA/1299354‑1299639                                                                                                                                                 |                                                                                                                                              tcAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataa                                                                                                                                           >  2:353308‑M1/1‑145 (MQ=255) tcAAATTAAAGTTAGTTAAAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCAAATCATAATCCTGGGCTTGCTGAAAAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataa                                                                                                                                           <  1:270006‑M1/149‑5 (MQ=255)  cAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCAACATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCAACTGCCTTTGGTAGAGGAAAGTGCTGAataat                                                                                                                                          >  1:26108‑M1/1‑144 (MQ=255)   aaaTTACAGTTATTTATAAGGATTTCCTTAACTGCTTCTCTTGAGCATCATGTTATTTTCGCCACGTCATAATCCTGGGCTTGCTGAAGAATACTTGAAATGATATTATTAATTCCACTGCCTTTGGTGGGGGAAGGTGTTAAataata                                                                                                                                         <  2:452602‑M1/149‑7 (MQ=255)     aTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTACAAAataataat                                                                                                                                       >  2:268918‑M1/1‑141 (MQ=255)          agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                                                                                                                  <  1:557404‑M1/149‑14 (MQ=255)                   taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                                                                                                                         >  1:488533‑M1/1‑127 (MQ=255)                       tatTTCCTTTACTCCTTCTCGCCTCCATCCTGTTATTCTCGACACATCATAATCCTTCGCTTGCTGAAGCATAATTGAACTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGCGTTAAataataatcaattgttaaattattgt                                                                                                                     <  2:315148‑M1/148‑27 (MQ=255)                             cTTAACTGCTTCTCCTTACCATCATGTTATTTTCGCCACATCATAATCCTGGGTTTGATGAAGAATAATTGAAATTATATTATTGGTCCCATTACTTTTGGTAGAGGTAAGTGGTAAataataatcaattgttaaattattatgaattt                                                                                                               >  2:249941‑M1/1‑117 (MQ=255)                                     cttcttCTCACCATCATTTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                       <  1:333893‑M1/149‑41 (MQ=255)                                        ctcttcACCATCATTTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                    <  1:419074‑M1/149‑44 (MQ=255)                                        ctccccACCATCATGTTATTTTCGCAACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATTATATTATTAATTCCACTGCCTTTTGTAGAGGAATGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                    <  1:227945‑M1/149‑44 (MQ=255)                                         tcctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGTAAAGGGCGAAataataatcaattgttaaattaatgtgcatttcactaatcgaac                                                                                                   >  1:150270‑M1/1‑105 (MQ=255)                                             cACCATCATGTTATTTTCGCCACATCATAATCATGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgta                                                                                               <  2:262843‑M1/149‑49 (MQ=255)                                               acatcatgTTATTTTCGCAACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtccatttcactactggaactgtaat                                                                                             <  2:305797‑M1/148‑51 (MQ=255)                                                catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgtatttcactactggaactgtaatc                                                                                            >  1:192982‑M1/1‑98 (MQ=255)                                                 atcatGTTATCTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatca                                                                                           >  1:393966‑M1/1‑97 (MQ=255)                                                      gtgtttttcgccACATCATGATCCTGGGTTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTGGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                      <  2:472201‑M1/145‑58 (MQ=255)                                                                 tacatGATAACACTGGGCTTGCTGAATAATAATTGAAATGATATTATGAATTCAACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaacatagacatgc                                                                           <  2:53567‑M1/148‑69 (MQ=255)                                                                   catcatAATCCTGGGCTTGCTGAAGAATCATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctt                                                                         >  1:142479‑M1/1‑79 (MQ=255)                                                                        tAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagcca                                                                    >  2:526766‑M1/1‑74 (MQ=255)                                                                                  cTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctattt                                                          <  1:353308‑M1/149‑86 (MQ=255)                                                                                      cTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAAAGAAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgatt                                                      >  1:239499‑M1/1‑60 (MQ=255)                                                                                       tGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTAGGTAGAGGAAAGTGCTAAttaataatcaattgttaaattattgtgcatttaactactggaactgtaatcagaaaagatagacatgcatagccaatcaatatatgattg                                                     >  2:414884‑M1/1‑59 (MQ=255)                                                                                        gaagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatca                                                                                           <  2:88812‑M1/110‑53 (MQ=255)                                                                                        gaagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatca                                                                                           >  1:88812‑M1/1‑58 (MQ=255)                                                                                                 ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcacttgttaaattattatgcatttcactactggaaccgtaatccaaaaagaaagaaatgcttagccaatctctatttgatgaaattgaacga                                           >  2:37471‑M1/1‑49 (MQ=255)                                                                                                     aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtt                                       <  1:284064‑M1/149‑105 (MQ=255)                                                                                                      aTGATAGTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtattcataaaagatagacatgcttagtcaatctctatttgattgaattgaaagatgttt                                      <  1:270114‑M1/149‑106 (MQ=255)                                                                                                            ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                                <  1:526766‑M1/149‑112 (MQ=255)                                                                                                            ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                             >  2:548917‑M1/1‑38 (MQ=255)                                                                                                            ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                             <  1:548917‑M1/88‑51 (MQ=255)                                                                                                             tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaagg                               >  1:99878‑M1/1‑37 (MQ=255)                                                                                                               ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggca                             >  1:454574‑M1/1‑35 (MQ=255)                                                                                                               ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggc                              >  2:26716‑M1/1‑35 (MQ=255)                                                                                                               ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggc                              <  1:26716‑M1/148‑114 (MQ=255)                                                                                                                taATTCCACTGCCTTTTGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatccgaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgcttgttcaggcat                            <  2:538847‑M1/149‑116 (MQ=255)                                                                                                                  aTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattattaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgg                          >  1:181843‑M1/1‑32 (MQ=255)                                                                                                                       aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatacttagccaatttctatttgatttaattgaagaatgtttgttaagcgagggatgct                     >  2:223970‑M1/1‑27 (MQ=255)                                                                                                                             tttGGTAGAGGAAATGGATAAataataattanttgttaaagtattgtgcatttcactactggaactgtaatcagaaaagatagacattcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctat               <  2:150270‑M1/149‑129 (MQ=255)                                                                                                                                        aaaGTGCTAAataataatctattgttctattattgtgtatttcattactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgata    >  1:256075‑M1/1‑10 (MQ=255)                                                                                                                                          aGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacg  <  2:488533‑M1/149‑142 (MQ=255)                                                                                                                                                 |                                                                                                                                              TCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCT  >  NC_000913_3_vch_tpiA/1299354‑1299639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.