New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 3090373	42 (0.880)	5 (0.110)	5/272	6.1	11.9%	noncoding (3090373/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 3090384	34 (0.750)					noncoding (3090384/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAGGGCA  >  NC_000913_3_vch_tpiA/3090228‑3090515                                                                                                                                                  |                                                                                                                                               cGGTGAACAGCTGGTTGGGAAATAACCATCTGAACTATCAGGAATTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCggtg                                                                                                                                             <  2:46948/149‑1 (MQ=255)  ggTGAACAGCTGGTTGCGAAATAACCATCTGAACTAGCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCggtgg                                                                                                                                            <  1:136902/149‑1 (MQ=255)     gAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTAc                                                                                                                                         >  1:629168/1‑149 (MQ=255)      aaCAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACt                                                                                                                                        >  1:475886/1‑149 (MQ=255)        cggCTGGTTGCGAAATAACCTTCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGa                                                                                                                                      <  2:717706/147‑1 (MQ=255)        cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTCTTGCTGCGGTGGTACTGa                                                                                                                                      >  2:289842/1‑149 (MQ=255)         aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAg                                                                                                                                     >  2:172184/1‑149 (MQ=255)             ggTTGGGAAATAACCATCTGAACTATCAGGAACTTTCCGGATCTGGCTGATTGCAGACCAAAACAGCTTTCGCTACGGTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCgca                                                                                                                                 <  1:427089/149‑1 (MQ=255)              gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGGGCgcag                                                                                                                                >  1:434508/1‑149 (MQ=255)                             tCTGAACTATTAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCCCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGTTGGTACTGCGGGCAGCATTTTccggcccgt                                                                                                                 >  2:77328/1‑148 (MQ=255)                               tGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTCATACGGTGGGACTGGGCGCAGCATTTTCCGGAACGGCg                                                                                                               >  1:736812/1‑149 (MQ=255)                                 aaCTATCAGGAACGTTCCTGATCTGGCTGATTGCATACTAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGtt                                                                                                             <  2:325329/149‑1 (MQ=255)                                  aCTATCAGGTACTTTCCTGATCCGGCCGACTGCATACCAACACAGCTTGCGTTACGTTGTTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTGTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTg                                                                                                            <  2:520691/149‑1 (MQ=255)                                    tATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTAACGTTATGGGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGc                                                                                                          >  1:825535/1‑149 (MQ=255)                                          gAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGTAgg                                                                                                    >  1:339289/1‑149 (MQ=255)                                                        tggttaaTTGCCTACCAAAACACGTTTCGCTACGTGGCTGGCCCCTCCTAACCCTGAGTCCGCGTTGCAGCTTGCTTTGCCTATGGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGttttt                                                                                      <  2:513725/143‑1 (MQ=255)                                                           cTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTtctc                                                                                   >  1:246081/1‑149 (MQ=255)                                                            tGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTAATGAGGGCAGCATTTTCCGGACCGGCGTTGGCCGAAGGGATGAGTAGTTTTTCTCa                                                                                  >  1:46181/1‑149 (MQ=255)                                                             gATTGGATACAAAAACAGCTTTCGGTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAg                                                                                 <  2:291767/149‑1 (MQ=255)                                                                  cATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCCGGCGaa                                                                            >  1:214980/1‑149 (MQ=255)                                                                   aTACCAAAACAGCTTTCGCTACGTTGCTGGTTTGTTTGATCACCGATTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGaaa                                                                           <  2:387569/149‑1 (MQ=255)                                                                        aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATCTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCAGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCcgc                                                                      <  1:238276/149‑1 (MQ=255)                                                                         aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCcgcg                                                                     >  1:57951/1‑149 (MQ=255)                                                                                tttCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTaa                                                              <  1:172184/149‑1 (MQ=255)                                                                                      tACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTcc                                                        >  2:472879/1‑149 (MQ=255)                                                                                         gTTGCTTGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACg                                                     <  2:329643/149‑1 (MQ=255)                                                                                           tGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAATGCCGCGGCGGTAAAAGTCCACGCt                                                   <  1:727443/149‑1 (MQ=255)                                                                                                  tCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCCCAGGCGAAAGCCGCCGCGGTAAAAGTCCACGCTGTcgccc                                            >  2:190302/1‑147 (MQ=255)                                                                                                       ttAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGt                                       <  2:660667/149‑1 (MQ=255)                                                                                                            gagaaGTAAGTGATGTACCGTTATTTGTCTATTTCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGtt                                  <  2:76111/145‑1 (MQ=255)                                                                                                            acGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGtt                                  >  1:835800/1‑149 (MQ=255)                                                                                                                    aGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTgg                                                                                                           >  1:428390/1‑68 (MQ=255)                                                                                                                    aGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTgg                                                                                                           <  2:428390/68‑1 (MQ=255)                                                                                                                      tGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGGAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGa                        <  1:556409/149‑1 (MQ=255)                                                                                                                            aCCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTaaa                  >  1:434537/1‑149 (MQ=255)                                                                                                                              cGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAAt                >  1:492815/1‑149 (MQ=255)                                                                                                                               gTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGAGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATggagcatt               >  1:788953/1‑142 (MQ=255)                                                                                                                                         tATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAgg     <  2:434537/149‑1 (MQ=255)                                                                                                                                         tATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAgg     >  1:267334/1‑149 (MQ=255)                                                                                                                                          aTTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCCGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAggc    >  2:75663/1‑148 (MQ=255)                                                                                                                                          aTTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAACTTAACTGGCAggg    >  1:663932/1‑149 (MQ=255)                                                                                                                                            tgcgggggtggtACGGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAGGGCa  <  2:104378/143‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               CGGTGAACAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAGGGCA  >  NC_000913_3_vch_tpiA/3090228‑3090515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.