New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4542720	23 (0.480)	4 (0.090)	4/268	6.6	13.0%	noncoding (4542720/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4543016	32 (0.720)					noncoding (4543016/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCT‑AACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAG  >  NC_000913_3_vch_tpiA/4542578‑4542860                                                                                                                                               |                                                                                                                                              ataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt                                                                                                                                         <  2:710187/149‑1 (MQ=255)    ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATAACAGACAATTGGGGCCAAACTGTACa                                                                                                                                      >  1:80778/1‑149 (MQ=255)       ccAGTAATGCTACTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat                                                                                                                                   >  1:528699/1‑149 (MQ=255)                ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa                                                                                                                          <  1:135157/149‑1 (MQ=255)                             cGGATTATGGGAAAGAAATAATGTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATAACATAAATAAGTTACGTAttttt                                                                                                             >  2:692626/1‑149 (MQ=255)                               gATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc                                                                                                           >  1:78671/1‑149 (MQ=255)                                                aaagtcAAAAACCAATAATATAAAAGATAAGAGGGTTGATTTAACTTATGTATAAAAAAGTTAAAAAAACAAATAGATACAAGACAAGTGAGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATAtt                                                                                          <  2:232966/145‑1 (MQ=255)                                                 atCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa                                                                                         <  1:128469/149‑1 (MQ=255)                                                  tctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAATTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCCAACATAAAAATATTaa                                                                                        >  2:311581/1‑149 (MQ=255)                                                    tcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGAGGCCAAACTGTCCATATCATAAAAAAGTTACGTATTTTTTCTCACACATAACAATCTTtaac                                                                                      >  2:384470/1‑148 (MQ=255)                                                    caaTAAACGAAAAATTAAAACGAGAAGATGTTTGATTTAACTTATTCATAATAAAGTTAAAAAAACAAATAAATACAAGACCATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa                                                                                      <  2:556990/147‑1 (MQ=255)                                                               aaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaaa                                                                           >  2:726190/1‑149 (MQ=255)                                                                  ttAAAAAGAGAAGAGGTTTGATTTAACATATGGATAATAAAGGTAAAAAAACAAAAAAATACAAGACAATTAAGGCAAAACTGTAAATATAAAAAATAAGTTACGAATTTTTTCTCACTCGTAAAAACTATAAAAAACGAAAAAAAGCa                                                                        >  2:396276/1‑149 (MQ=255)                                                                            aagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAACCTTCT‑TACTGtt                                                             >  1:61162/1‑149 (MQ=255)                                                                                             ttATTGATAATGAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAACATTAAAAAACGACAAAAAGCATCT‑AACTGTTTGATATGTAAATTAttt                                            <  1:820699/149‑1 (MQ=255)                                                                                               aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATGAAAATATTAAAAAACGACAAAAAGCATCT‑ACCTGTTTGATATGTAAATTATTTCt                                          >  2:65864/1‑149 (MQ=255)                                                                                                            taaaacaaacAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGGTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTCCACAGCTT‑ATATGTAAATTATTTCTATTGTAaattaat                             <  1:626323/147‑1 (MQ=255)                                                                                                               aaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCT‑AACTGTTTGATATGTAAATTATTTCTATTGTCAATTAATTTc                          >  2:118437/1‑149 (MQ=255)                                                                                                                 aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCT‑AACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac                        >  1:728169/1‑149 (MQ=255)                                                                                                                      aaataaatACAAGACACTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCT‑AACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc                   <  1:384470/149‑1 (MQ=255)                                                                                                                      aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCT‑AACTGTTTGatat                                                       <  2:540964/113‑1 (MQ=255)                                                                                                                      aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCT‑AACTGTTTGatat                                                       >  1:540964/1‑113 (MQ=255)                                                                                                                                       ttGGGGCCAAACTGTTCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCT‑AACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAg  <  1:436140/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                              ATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCT‑AACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAG  >  NC_000913_3_vch_tpiA/4542578‑4542860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.