New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3042440 =	61 (1.280)	4 (0.090)	4/272	6.7	6.7%	noncoding (120/155 nt)	REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913_3_vch_tpiA	3042472 =	54 (1.190)					noncoding (152/155 nt)	REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATA  >  NC_000913_3_vch_tpiA/3042324‑3042617                                                                                                                                                     |                                                                                                                                                  tGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCCCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGcc                                                                                                                                                   <  1:777066/149‑1 (MQ=255)       gACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACaaa                                                                                                                                             >  1:250640/1‑149 (MQ=255)        aCGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAAg                                                                                                                                            <  1:730300/149‑1 (MQ=255)        aCGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGCTGTGCGCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAg                                                                                                                                            >  1:65678/1‑149 (MQ=255)         cGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAgg                                                                                                                                           <  1:346178/149‑1 (MQ=255)           cTGGGGCGTTTTAGCGTGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCa                                                                                                                                         <  2:118730/149‑1 (MQ=255)             ggCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATa                                                                                                                                       <  2:250640/149‑1 (MQ=255)             ggCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATa                                                                                                                                       <  1:470036/149‑1 (MQ=255)              gcgcGGCTTATCATGTCTGGGATTTGATGCCTTTATCACACCCGTGACGAGGCCCGTAGATCGGATAAGGCGTTCACGACGAATCCGGCAGTTGTGCTCCGGTGCCTGATGCGACGCTGGCGCGTCGTATCTGGCCTACAACGGCATAc                                                                                                                                      >  2:579558/1‑149 (MQ=37)                    cTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTa                                                                                                                                <  1:605009/149‑1 (MQ=255)                    cTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCCCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTa                                                                                                                                <  1:604852/149‑1 (MQ=255)                      tATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTagg                                                                                                                              >  1:420332/1‑147 (MQ=255)                         cATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCt                                                                                                                           <  1:635056/149‑1 (MQ=255)                            gTCTGGGATTTGATGCCTTTATCACAACAGGGGCGAGGCCCATAGATCGGATAAGGCGTTCACGCAGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGcc                                                                                                                        >  2:799366/1‑149 (MQ=255)                               tGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGACTACAAAGGCATCCCCATTACGCCTGCCCaa                                                                                                                     >  2:705398/1‑149 (MQ=255)                                    tttGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTCTGAGGGCTGTAAAGGCATACCCATTACGCCTGCCCAATATAc                                                                                                                <  1:625973/149‑1 (MQ=38)                                          gCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAg                                                                                                          >  1:331993/1‑149 (MQ=255)                                           ccTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGCCGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATCTACAAATCGa                                                                                                         >  2:389073/1‑149 (MQ=255)                                            cTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGCCGCTGGCGCGACTTATCATGCCTGCACAGGCACACCCATTCCGCCAGCCCAATACACCAAtgcac                                                                                                        >  2:657896/1‑145 (MQ=25)                                             tttATAACAACGGCAACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATc                                                                                                       >  2:523572/1‑149 (MQ=255)                                                 tCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCa                                                                                                   <  1:300933/149‑1 (MQ=255)                                                 tCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTGCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCa                                                                                                   <  1:27717/149‑1 (MQ=255)                                                   acaacaGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAAAGGCATACCCATTACGCCTGACCAATATACAAGTAGATGGCCAGa                                                                                                 >  1:445066/1‑149 (MQ=255)                                                    caacaGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGACCTGCAAAGGCATACCCATTACGCCTGCCCCATATACAACTCGATCGCCAGaa                                                                                                >  2:511200/1‑149 (MQ=37)                                                     aacaGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGaaa                                                                                               >  1:304975/1‑149 (MQ=255)                                                         gggACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTgg                                                                                           <  1:606161/149‑1 (MQ=255)                                                         gggACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAATgg                                                                                           >  2:697243/1‑149 (MQ=255)                                                           gACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGca                                                                                         >  1:260104/1‑149 (MQ=255)                                                               aGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGcacaca                                                                                     <  2:606897/149‑1 (MQ=255)                                                                   ccGTAGATCGGCTAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCCTTACACCTGCCCAATATCCAAATAGATCACCAGAAAGTGGCAAACACTAc                                                                                 >  2:541848/1‑149 (MQ=37)                                                                         aTCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGa                                                                           <  1:677556/149‑1 (MQ=255)                                                                          tCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGACACACGCTACCGCCGAg                                                                          >  1:536638/1‑149 (MQ=255)                                                                                   gCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGcc                                                                 >  1:119589/1‑149 (MQ=255)                                                                                      ggcaagCCGAATCCGGCAGTGGGGGTCCGATGCCTGATGGGACGCTGGCGCGTCTTATAAGGCCTACAAAGGCATACCCATTACGCCTGCACAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTg                                                              <  2:345369/144‑1 (MQ=255)                                                                                           gCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGa                                                         >  1:673044/1‑149 (MQ=255)                                                                                           gCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGa                                                         >  1:259387/1‑149 (MQ=255)                                                                                           gCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCAGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGACCAGCCCGAACCCGTGCAAGa                                                         >  2:459370/1‑149 (MQ=38)                                                                                             cGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATg                                                       <  1:523572/149‑1 (MQ=255)                                                                                                    ggCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGt                                                >  1:365398/1‑149 (MQ=255)                                                                                                        gTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTa                                            <  1:36845/149‑1 (MQ=255)                                                                                                         ttGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGATGCCGTGCCAGATGGCATGGTTGTAt                                           >  1:831086/1‑149 (MQ=255)                                                                                                         ttGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTAt                                           <  2:831086/149‑1 (MQ=255)                                                                                                         ttGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTAt                                           <  1:241479/149‑1 (MQ=255)                                                                                                         ttGTGCTCCGATCGCTGATGCGACGCTGGCGCGCCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTAt                                           <  1:135769/149‑1 (MQ=255)                                                                                                         ttGCGCGCCGATGCCGGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTAt                                           <  1:251273/149‑1 (MQ=255)                                                                                                           gtgCTCCGATGTCGGATGGGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATgg                                         <  2:344091/149‑1 (MQ=255)                                                                                                               tCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAat                                                                                                                    >  1:396144/1‑70 (MQ=255)                                                                                                               tCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAat                                                                                                                    <  2:396144/70‑1 (MQ=255)                                                                                                                 cGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCg                                   >  1:720679/1‑149 (MQ=255)                                                                                                                  gATGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCCACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATTGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGCTTGTATGGAATGCGt                                  <  2:690805/149‑1 (MQ=255)                                                                                                                      ccTGAGGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGc                              <  1:114517/149‑1 (MQ=255)                                                                                                                            gCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGt                        <  2:65678/149‑1 (MQ=255)                                                                                                                                         ttcataacAGGTCTACACAGGTATACCCTTTCCGCCTGCACGACATGCAAATAGAACGCCAAAAAGTGGCACACACTACCGCCGAGCACCAAGCCGTGCCAGAGGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCAcccc           <  2:300126/142‑1 (MQ=255)                                                                                                                                           cTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGa         <  2:720679/149‑1 (MQ=255)                                                                                                                                           cTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGa         <  1:784973/149‑1 (MQ=255)                                                                                                                                                  ggCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATCGTTGTATGGAATGCGTTTGCAGACCTAGAAAATCACCCCGCGCGACTa  >  2:484236/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCATTACGCCTGCCCAATATACAAATAGATCGCCAGAAAGTGGCACACACTACCGCCGAGCACGAAGCCGTGCCAGATGGCATGGTTGTATGGAATGCGTTTGCAGACGTAGAAAATCACCCCGAGCGAATA  >  NC_000913_3_vch_tpiA/3042324‑3042617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.